Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I21
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    32   0.40 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    30   2.1  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    29   3.7  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    29   3.7  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      29   3.7  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   8.6  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    28   8.6  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    28   8.6  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    28   8.6  

>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 28/102 (27%), Positives = 30/102 (29%), Gaps = 2/102 (1%)
 Frame = -3

Query: 675 GXXXXGXXXDXGXVGXXGGXQAXXXGXXXGXGXEAPXXG*XGGGGGRXXMGXXXAGVXXX 496
           G    G     G  G  GG Q        G        G  GGGGGR        G    
Sbjct: 154 GQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGG 213

Query: 495 MGXL--WAXGGVXADXGXXGKRXXXGXAXXXGXGGXGXGXXG 376
            G     + GG     G  G +   G     G GG G G  G
Sbjct: 214 QGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRG 255



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/87 (25%), Positives = 24/87 (27%)
 Frame = -1

Query: 632 GGXGAXRXXXGGXXXGXAXRLRXXAEXGEGXAGXAWXXXXXGXXX*WGYYGQXAGSXRTX 453
           GG G       G   G         + G    G        G    WG  G   G  +  
Sbjct: 165 GGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGG 224

Query: 452 XXXGSGXPGGQXXXXAXGVXGXGXXGG 372
              G G  GGQ      G  G G  GG
Sbjct: 225 SQGGWGNQGGQQGGGRGGQQGPGGWGG 251


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 29/104 (27%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
 Frame = -3

Query: 675 GXXXXGXXXDXGXVGXXGGXQAXXXGXXXGXGXEAPXXG*XGGGGGRXXMGXXXAGVXXX 496
           G    G     G  G  GG      G   G G      G   GGGG    G    G    
Sbjct: 125 GGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFG-GYGGGGMGGGGYGGGGDGGY 183

Query: 495 MGXLWAXGGVXA-DXGXXGKRXXXGXAXXXGXGGXGXGXXGXMG 367
            G  +  GG+     G  G     G     G GG G G  G  G
Sbjct: 184 GGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSG 227


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 26/96 (27%), Positives = 26/96 (27%)
 Frame = -1

Query: 677 RGXXXAAXXGTGXXWGGXGAXRXXXGGXXXGXAXRLRXXAEXGEGXAGXAWXXXXXGXXX 498
           RG       G G  WGG G      GG   G           G G  G            
Sbjct: 101 RGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGG-----GGRGGGGRGGDGRGPPGSNGGG 155

Query: 497 *WGYYGQXAGSXRTXXXXGSGXPGGQXXXXAXGVXG 390
            WG  G   G        G G  GG     A GV G
Sbjct: 156 DWG--GNGGGGRGGGGGRGGGGGGGAGERIAEGVLG 189



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 26/100 (26%), Positives = 27/100 (27%), Gaps = 2/100 (2%)
 Frame = -3

Query: 660 GXXXDXGXVGXXGGXQAXXXGXXXGXGXEAPXXG*XGGGGGRXXMGXXXAGVXXXM--GX 487
           G   + G  G   G      G   G G      G   GGGG    G    G       G 
Sbjct: 73  GGGGNWGGNGGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGG 132

Query: 486 LWAXGGVXADXGXXGKRXXXGXAXXXGXGGXGXGXXGXMG 367
               GG        G     G     G GG G G  G  G
Sbjct: 133 GGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRG 172


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/66 (30%), Positives = 21/66 (31%)
 Frame = -3

Query: 588 GXGXEAPXXG*XGGGGGRXXMGXXXAGVXXXMGXLWAXGGVXADXGXXGKRXXXGXAXXX 409
           G G  AP     GGGGGR   G    G     G      G        G+    G     
Sbjct: 660 GFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRG 719

Query: 408 GXGGXG 391
           G GG G
Sbjct: 720 GYGGRG 725


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/66 (30%), Positives = 21/66 (31%)
 Frame = -3

Query: 588 GXGXEAPXXG*XGGGGGRXXMGXXXAGVXXXMGXLWAXGGVXADXGXXGKRXXXGXAXXX 409
           G G  AP     GGGGGR   G    G     G      G        G+    G     
Sbjct: 701 GFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRG 760

Query: 408 GXGGXG 391
           G GG G
Sbjct: 761 GYGGRG 766


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/66 (30%), Positives = 21/66 (31%)
 Frame = -3

Query: 588 GXGXEAPXXG*XGGGGGRXXMGXXXAGVXXXMGXLWAXGGVXADXGXXGKRXXXGXAXXX 409
           G G  AP     GGGGGR   G    G     G      G        G+    G     
Sbjct: 660 GFGQFAPTSSAYGGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRG 719

Query: 408 GXGGXG 391
           G GG G
Sbjct: 720 GYGGRG 725


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/92 (23%), Positives = 25/92 (27%), Gaps = 1/92 (1%)
 Frame = +1

Query: 391 PXTPXAXXXXXPPGXPLPXXXXVRXDPAXCP*XPHXXXXPXXXXXHAXP-AXPSPXSAXX 567
           P TP       PP  P      +   P+     P     P        P   PSP  A  
Sbjct: 433 PKTPTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEV 492

Query: 568 RSLXAXPXXXPPXXXLXAPXPPHXXPVPXXAA 663
                 P   PP     +  PP   P P   A
Sbjct: 493 SKSPPPPPPLPPIATPSSVPPPPPPPPPPPPA 524


>Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical
           protein T06E4.8 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/52 (34%), Positives = 19/52 (36%)
 Frame = +1

Query: 529 AXPAXPSPXSAXXRSLXAXPXXXPPXXXLXAPXPPHXXPVPXXAAXXXPLAS 684
           A  A P    A    + A P   PP   L AP P    P P  AA     AS
Sbjct: 69  APSAIPLAAPALPVPIAAAPFFTPPAPVLAAPAPLLAPPAPVFAAPRPVFAS 120


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
            R08B4.1b protein.
          Length = 1160

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 26/103 (25%), Positives = 27/103 (26%)
 Frame = -3

Query: 675  GXXXXGXXXDXGXVGXXGGXQAXXXGXXXGXGXEAPXXG*XGGGGGRXXMGXXXAGVXXX 496
            G    G     G  G  GG      G   G G  +      GGGGG    G    G    
Sbjct: 784  GSSGGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNS----GGGGGNGGGGNGGGGNGNG 839

Query: 495  MGXLWAXGGVXADXGXXGKRXXXGXAXXXGXGGXGXGXXGXMG 367
             G     GG  A  G          A      G G G     G
Sbjct: 840  GGAGDGNGGAGAGNGNGAGAGNGNGAGAGNGNGAGAGNGNGAG 882


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/62 (32%), Positives = 21/62 (33%)
 Frame = -2

Query: 676 GXGXXRXXXGXGXXGXXXGRTGXDXGGXGRAXXXGSGXRLXRGRGXPVXHGXXXSXGXGX 497
           G G  R   G G  G   G  G + GG G     G G     GRG     G     G G 
Sbjct: 52  GPGWGRGGGGSGWGGGRGGGWGNNGGG-GNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGG 110

Query: 496 DG 491
            G
Sbjct: 111 RG 112


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 28/105 (26%), Positives = 30/105 (28%), Gaps = 9/105 (8%)
 Frame = +1

Query: 373 PPXXPXPXTPXAXXXXXPPGXPLPXXXXVRXDP--AXCP*X--PHXXXXPXXXXXHAXPA 540
           PP  P P    A     PP  P P        P  A  P    P     P     HA PA
Sbjct: 50  PPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPA 109

Query: 541 XPSPXSAXXRSLXAXPXXX-----PPXXXLXAPXPPHXXPVPXXA 660
              P +   +     P        PP      P PP   P P  A
Sbjct: 110 PAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPA 154


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 24/78 (30%), Positives = 26/78 (33%)
 Frame = -1

Query: 602 GGXXXGXAXRLRXXAEXGEGXAGXAWXXXXXGXXX*WGYYGQXAGSXRTXXXXGSGXPGG 423
           GG   G A R    A  G G  G        G     G +GQ  G  +     G G P  
Sbjct: 226 GGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYG-----GGWGQQGGGGQ----GGWGGPQQ 276

Query: 422 QXXXXAXGVXGXGXXGGW 369
           Q      G  G G  GGW
Sbjct: 277 QQGGGGWGQQGGGGQGGW 294


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 24/78 (30%), Positives = 26/78 (33%)
 Frame = -1

Query: 602 GGXXXGXAXRLRXXAEXGEGXAGXAWXXXXXGXXX*WGYYGQXAGSXRTXXXXGSGXPGG 423
           GG   G A R    A  G G  G        G     G +GQ  G  +     G G P  
Sbjct: 188 GGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYG-----GGWGQQGGGGQ----GGWGGPQQ 238

Query: 422 QXXXXAXGVXGXGXXGGW 369
           Q      G  G G  GGW
Sbjct: 239 QQGGGGWGQQGGGGQGGW 256


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 24/78 (30%), Positives = 26/78 (33%)
 Frame = -1

Query: 602 GGXXXGXAXRLRXXAEXGEGXAGXAWXXXXXGXXX*WGYYGQXAGSXRTXXXXGSGXPGG 423
           GG   G A R    A  G G  G        G     G +GQ  G  +     G G P  
Sbjct: 226 GGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYG-----GGWGQQGGGGQ----GGWGGPQQ 276

Query: 422 QXXXXAXGVXGXGXXGGW 369
           Q      G  G G  GGW
Sbjct: 277 QQGGGGWGQQGGGGQGGW 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,611,553
Number of Sequences: 27780
Number of extensions: 95588
Number of successful extensions: 416
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)