Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I18
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    27   3.7  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   4.9  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   4.9  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   6.5  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   8.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.6  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   8.6  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 267 RPRGGAACLVVVLTAGTPLL*PGFDPGRR 181
           RP GGA C+ +++    P++   F+PG R
Sbjct: 158 RPTGGAGCVALLVGPNAPIV---FEPGLR 183


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 203 RVLTPDGDRTPGVRVXGESFSGWALNYLGP 114
           RVL+P+   T      G + +GW + Y+ P
Sbjct: 548 RVLSPEEKNTVAHHEAGHAVAGWFMEYVDP 577


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 197 KPGQSRGVPAVNTTTRHAAPP--RGRPTDGSSRR*STTND 310
           KP  S+   A NTT+R   PP  R R   G++    TT+D
Sbjct: 445 KPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSD 484


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 261 EDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPG--YPAGPEP 395
           E A+P   R  + +P  SVSA++++   +P  A       YP+ P P
Sbjct: 212 EGAKPPFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAP 258


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 361 LVFRDTPLGQNQPAGSERDTPPTELLF 441
           LV+  + +G++QPA   +D PP ELLF
Sbjct: 351 LVWDLSRIGEDQPAEEAQDGPP-ELLF 376


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 188  PGSKPGQSRGVPAVNTTTRHAAP 256
            P  +PG S G+ A+NT T    P
Sbjct: 1621 PPPQPGNSSGMSAMNTNTTSTTP 1643


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 188  PGSKPGQSRGVPAVNTTTRHAAP 256
            P  +PG S G+ A+NT T    P
Sbjct: 1621 PPPQPGNSSGMSAMNTNTTSTTP 1643


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 191 GSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTN 307
           GSK  Q+   P  ++   + APP+ +P    S   +TT+
Sbjct: 741 GSKKKQTEIPPVSSSPPHNDAPPKAKPISAPSELPNTTS 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,971
Number of Sequences: 5004
Number of extensions: 42480
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)