Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_I17
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0072 - 13051145-13052362 33 0.32
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223... 32 0.42
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 30 1.7
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 30 2.3
03_05_0844 + 28139996-28140736 30 2.3
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 3.9
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 29 5.2
01_06_0475 + 29610268-29610711 28 6.9
01_01_0196 + 1706539-1706663,1706705-1706939 28 6.9
12_01_0467 + 3657320-3657992,3658077-3658342 28 9.1
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649... 28 9.1
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 28 9.1
04_01_0409 - 5409018-5410268 28 9.1
01_05_0045 + 17535929-17536249,17536255-17536520,17537169-175377... 28 9.1
>07_03_0072 - 13051145-13052362
Length = 405
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = -3
Query: 562 PNYSIPFCRIPVGAPVVRQERRPSMTTWT*SPSVSICSRRPCATSIKRHDMRTLSSWPPV 383
P +IP R+P P++ E R + + + + P T+ KRH L + PV
Sbjct: 83 PKAAIPRGRLPGVMPLISAETRLGGVVLGMASTAPLLPKPPSTTTAKRHPSPCLQAPQPV 142
Query: 382 TTFPILRTEW 353
P+ W
Sbjct: 143 GLSPVTAVRW 152
>06_01_0309 -
2233573-2234556,2234670-2234721,2235406-2236391,
2237790-2238050
Length = 760
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 592 SPGPHSLKV--IPNYSIPFCRIPVGAPVVRQERRPSM 488
+PGP S+ + P +SIP APVV Q R PSM
Sbjct: 614 APGPPSMPMNYFPPFSIPVMNPTAPAPVVEQGRHPSM 650
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 467 ISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPK-HVISDP 312
+S Y +S SM F +AR P++ ++ NY+ RRR + + SDP
Sbjct: 53 VSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -1
Query: 306 STNGAFR*FKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 127
S NG R P SS +L +G L+L S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256
Query: 126 LLGFVLATS-SGLSPVSSPTKV 64
G V+ +GL +SP ++
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQI 278
>03_05_0844 + 28139996-28140736
Length = 246
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = -1
Query: 201 PLSFSP----DLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSSPTKVKATLK-*PLG 37
PLSF P D G R +G R+C L + A + G+ +PT KA + PLG
Sbjct: 21 PLSFLPVDHADYSGGRRMEAGARWCSDSLARRWAKA-AGGVRAPPTPTLAKAERRQAPLG 79
Query: 36 LS 31
LS
Sbjct: 80 LS 81
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 246 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 76
L TKG +T+ H P+ FSP S G E+ L + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 360 QNGKQSTSPKTRHLGPARSTNGAFR*FKHRSPFSSNPSLATKGSTSKLTLR 208
Q+ Q+ +P + H PA+ N ++ +RSPFS+ S + S S ++ R
Sbjct: 429 QSNSQTPTPISEH-HPAKHFNPIYQTSANRSPFSAVASGVNEASVSDISTR 478
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 270 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 181
SP SS+P S+++ TL HSP S SPD
Sbjct: 54 SPMSSSPP---SRSSTRATLTHSPSSASPD 80
>01_01_0196 + 1706539-1706663,1706705-1706939
Length = 119
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -3
Query: 595 RSPGPHSLKVIPNYSIPFCRIPVGAPVVRQERRPSMTTWT*SPSVSICSRRPCATSIK 422
R P P + +IPF R P RP WT S SVS+ R P T+I+
Sbjct: 23 RPPPPQPVTTTTTTAIPFRRRPC---------RPPWLDWTISVSVSLYERIPADTAIR 71
>12_01_0467 + 3657320-3657992,3658077-3658342
Length = 312
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = -3
Query: 574 LKVIPNYSIPFCR-IPVGAPVVRQERRPSMTTWT*SPSVSICSRRPCATSIKRHDMRTLS 398
L+ I SI + R +P ++R + T + S S + R D+ T S
Sbjct: 147 LEEIRMASIQYRRALPFAPHLMRMIEHVTQTQFICEESHSYLTLRVPKACSAAPDIPTSS 206
Query: 397 SWPPVTTFPILRTEWKAVDVAQNTSSRTR 311
SWPP P T+ QN +R +
Sbjct: 207 SWPPTRDIPSSSTQPPPEQAKQNRRARNK 235
>06_03_0049 +
15961706-15962017,15962952-15963851,15964769-15964913,
15964969-15965705
Length = 697
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 407 SHVVPLYRSGAWTPTADTY*WTLSPGRHGRSTFLTNHGGSDGYPAKRD 550
S +V +Y +G W PT D WT +P RH D + RD
Sbjct: 569 STLVQMYEAG-WAPTGDATGWTQAP-RHSIVVSTWASASEDRWHTPRD 614
>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 407 SHVVPLYRSGAWTPTADTY*WTLSPGRHGRSTFLTNHGGSDGYPAKRD 550
S +V +Y +G W PT D WT +P RH D + A D
Sbjct: 1175 STLVQMYEAG-WAPTGDAPRWTQAP-RHSIGVSTWASASEDRWHAPHD 1220
>04_01_0409 - 5409018-5410268
Length = 416
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 416 VPLYRSGAWTPTADTY*WTLSPGRH--GRSTFLT 511
V +Y +G W PT D WT +P RH G ST+L+
Sbjct: 276 VQMYEAG-WAPTGDAPGWTQAP-RHSIGVSTWLS 307
>01_05_0045 +
17535929-17536249,17536255-17536520,17537169-17537707,
17537779-17538386
Length = 577
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 416 VPLYRSGAWTPTADTY*WTLSPGRHGRSTFLTNHGGSDGYPAKRD 550
V +Y +G W PTAD WT +P RH D + A D
Sbjct: 529 VQMYEAG-WEPTADAPGWTQAP-RHSIGVSSQASASEDRWRAPHD 571
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,134,168
Number of Sequences: 37544
Number of extensions: 403561
Number of successful extensions: 1105
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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