Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I16
         (742 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   286   2e-77
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   286   2e-77
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   286   2e-77
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   286   2e-77
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   286   2e-77

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  286 bits (701), Expect = 2e-77
 Identities = 134/166 (80%), Positives = 144/166 (86%)
 Frame = -2

Query: 591 WHTKKXPRKTHKVLGKLPALELGILXGVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 412
           WHTKK PRKTHK L K+  +       VS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 246 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 305

Query: 411 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 232
           DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  H
Sbjct: 306 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 365

Query: 231 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 366 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411



 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -3

Query: 719 KVKWAQGTFGETYPLXILGL-PXDEMXDCIGVTKGQGYQGVTFRGTQRXYP 570
           KVKWA+    +  P+ +  +   DEM DC+GVTKG+G++GVT R   +  P
Sbjct: 204 KVKWAREHLEK--PIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLP 252


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  286 bits (701), Expect = 2e-77
 Identities = 134/166 (80%), Positives = 144/166 (86%)
 Frame = -2

Query: 591 WHTKKXPRKTHKVLGKLPALELGILXGVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 412
           WHTKK PRKTHK L K+  +       VS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 235 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 294

Query: 411 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 232
           DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  H
Sbjct: 295 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 354

Query: 231 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 355 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -3

Query: 719 KVKWAQGTFGETYPLXILGL-PXDEMXDCIGVTKGQGYQGVTFRGTQRXYP 570
           KVKWA+    +  P+ +  +   DEM DC+GVTKG+G++GVT R   +  P
Sbjct: 193 KVKWAREHLEK--PIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLP 241


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  286 bits (701), Expect = 2e-77
 Identities = 134/166 (80%), Positives = 144/166 (86%)
 Frame = -2

Query: 591 WHTKKXPRKTHKVLGKLPALELGILXGVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 412
           WHTKK PRKTHK L K+  +       VS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 222 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 281

Query: 411 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 232
           DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  H
Sbjct: 282 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 341

Query: 231 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 342 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -3

Query: 719 KVKWAQGTFGETYPLXILGL-PXDEMXDCIGVTKGQGYQGVTFRGTQRXYP 570
           KVKWA+    +  P+ +  +   DEM DC+GVTKG+G++GVT R   +  P
Sbjct: 180 KVKWAREHLEK--PIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLP 228


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  286 bits (701), Expect = 2e-77
 Identities = 134/166 (80%), Positives = 144/166 (86%)
 Frame = -2

Query: 591 WHTKKXPRKTHKVLGKLPALELGILXGVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 412
           WHTKK PRKTHK L K+  +       VS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 222 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 281

Query: 411 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 232
           DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  H
Sbjct: 282 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 341

Query: 231 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 342 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387



 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -3

Query: 719 KVKWAQGTFGETYPLXILGL-PXDEMXDCIGVTKGQGYQGVTFRGTQRXYP 570
           KVKWA+    +  P+ +  +   DEM DC+GVTKG+G++GVT R   +  P
Sbjct: 180 KVKWAREHLEK--PIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLP 228


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  286 bits (701), Expect = 2e-77
 Identities = 134/166 (80%), Positives = 144/166 (86%)
 Frame = -2

Query: 591 WHTKKXPRKTHKVLGKLPALELGILXGVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 412
           WHTKK PRKTHK L K+  +       VS TVARAGQKGYHHRTE+NKKIYRIG GIH K
Sbjct: 235 WHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTK 294

Query: 411 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 232
           DGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL  H
Sbjct: 295 DGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKH 354

Query: 231 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 94
           TKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 355 TKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400



 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -3

Query: 719 KVKWAQGTFGETYPLXILGL-PXDEMXDCIGVTKGQGYQGVTFRGTQRXYP 570
           KVKWA+    +  P+ +  +   DEM DC+GVTKG+G++GVT R   +  P
Sbjct: 193 KVKWAREHLEK--PIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLP 241


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,923,306
Number of Sequences: 53049
Number of extensions: 720404
Number of successful extensions: 1897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)