Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I12
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.018
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -1

Query: 703 PPPPPXXXXXXXXPPPPPPPP 641
           PPPPP        PPPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -1

Query: 703 PPPPPXXXXXXXXPPPPPPPP 641
           PPPPP        PPPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 703 PPPPPXXXXXXXXPPPPPPPP 641
           P P P        PPPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 703 PPPPPXXXXXXXXPPPPPPPP 641
           PPPPP        P P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPP 753



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 704 PPPPPXXXXXXXXXPPPPPPP 642
           P P P         PPPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 704 PPPPPXXXXXXXXXPPPPPPPP 639
           PPPPP          P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP 754



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 705 PPPPPXXXXXXXXXPPPPPPPP 640
           P P P          PPPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 703 PPPPPXXXXXXXXPPPPPPP 644
           PPPPP        PPPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 34.3 bits (75), Expect = 0.023
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 703 PPPPPXXXXXXXXPPPPPPPP 641
           PPPPP         PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -1

Query: 703 PPPPPXXXXXXXXPPPPPPPPXXXXXXXXXKKK 605
           PPPPP        PP  PPPP         K K
Sbjct: 9   PPPPPPPPGFE--PPSQPPPPPPPGYVKKRKNK 39


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 700  PPPPXXXXXXXXPPPPPPPP 641
            PPPP        PP  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 704  PPPPPXXXXXXXXXPPPPPPPP 639
            PPPPP         PP P  PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 662 PPPPPPPP 639
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 664 PPPPPPPP 641
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 662 PPPPPPPP 639
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 662 PPPPPPPP 639
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 662  PPPPPPPP 639
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 662 PPPPPPPP 639
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 663 PPPPPPPP 640
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 664 PPPPPPPP 641
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
 Frame = -1

Query: 703 PPPPPXXXXXXXXPPPP-----PPPP 641
           PPPPP        P PP     PPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,833
Number of Sequences: 5004
Number of extensions: 33241
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)