Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_I10
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 144 7e-35
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 141 5e-34
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.0
06_03_0543 + 21967787-21970261 29 5.3
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.0
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 9.2
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.2
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 144 bits (349), Expect = 7e-35
Identities = 63/110 (57%), Positives = 84/110 (76%)
Frame = -1
Query: 650 QIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 471
Q+Q +F E RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +S
Sbjct: 115 QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNS 174
Query: 470 IGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 321
IG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 175 IGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = -3
Query: 747 SRPFGQRAVXKFAAHTGATLIAXRFTPGAFTN 652
+RP+GQRAV KFA +TGA IA R TPG FTN
Sbjct: 83 ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTN 114
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 141 bits (342), Expect = 5e-34
Identities = 61/106 (57%), Positives = 81/106 (76%)
Frame = -1
Query: 650 QIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 471
Q+Q +F E RLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K S
Sbjct: 115 QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQS 174
Query: 470 IGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 333
IG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 175 IGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = -3
Query: 747 SRPFGQRAVXKFAAHTGATLIAXRFTPGAFTN 652
+RP+GQRAV KFA +TGA IA R TPG FTN
Sbjct: 83 ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTN 114
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 213 TRCSSCFWSTPCSRRMVCPGTR*VEHN 133
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 213 TRCSSCFWSTPCSRRMVCPGTR 148
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 464 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 375
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 213 TRCSSCFWSTPCSRRMVCPGTR*VEHN 133
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 478 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRXSRNAAWIWVS 657
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 658 K 660
K
Sbjct: 64 K 64
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 363 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 479
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,618,901
Number of Sequences: 37544
Number of extensions: 368299
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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