Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_I08
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 25 1.0
10_01_0280 - 2945929-2946437,2946541-2946649 31 1.1
10_01_0279 - 2938189-2938697,2938800-2938965 31 1.1
10_01_0277 - 2929266-2929686,2929735-2929774,2929885-2930050 31 1.1
10_01_0276 - 2921149-2921657,2921760-2921910 31 1.1
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 31 1.4
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 25 2.2
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 30 2.5
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 30 2.5
03_01_0391 - 3030532-3031344,3033177-3033434 30 2.5
07_01_0439 + 3333654-3334217 29 3.3
04_04_0351 + 24615858-24616448 28 7.6
01_03_0005 + 11568545-11569119,11569179-11569191 28 7.6
11_01_0252 + 1934505-1935032,1936001-1936957 28 10.0
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 28 10.0
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 25.4 bits (53), Expect(2) = 1.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 523 PGGKPPPPP 497
PGG PPPPP
Sbjct: 633 PGGPPPPPP 641
Score = 24.2 bits (50), Expect(2) = 1.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -2
Query: 676 PPXXXXPPPKKRPXPXXGGGGGP 608
PP PP P P G GGP
Sbjct: 614 PPPPPRPPGAPPPPPPPGKPGGP 636
>10_01_0280 - 2945929-2946437,2946541-2946649
Length = 205
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -2
Query: 706 PXXXFFFXXPPPXXXXPPPKKRPXPXXGGGGG 611
P +F P P PK P P GGGGG
Sbjct: 148 PFFDYFHKKPQGPEPKPDPKPTPLPANGGGGG 179
>10_01_0279 - 2938189-2938697,2938800-2938965
Length = 224
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -2
Query: 706 PXXXFFFXXPPPXXXXPPPKKRPXPXXGGGGG 611
P +F P P PK P P GGGGG
Sbjct: 167 PFFDYFHKKPQGPEPKPDPKPTPLPANGGGGG 198
>10_01_0277 - 2929266-2929686,2929735-2929774,2929885-2930050
Length = 208
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -2
Query: 706 PXXXFFFXXPPPXXXXPPPKKRPXPXXGGGGG 611
P +F P P PK P P GGGGG
Sbjct: 151 PFFDYFHKKPQGPEPKPDPKPTPLPANGGGGG 182
>10_01_0276 - 2921149-2921657,2921760-2921910
Length = 219
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -2
Query: 706 PXXXFFFXXPPPXXXXPPPKKRPXPXXGGGGG 611
P +F P P PK P P GGGGG
Sbjct: 162 PFFDYFHKKPQGPEPKPDPKPTPLPANGGGGG 193
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 679 PPPXXXXPPPKKRPXPXXGGGGG 611
PPP PPP+ P P GGGGG
Sbjct: 8 PPPPP--PPPQHPPPPQAGGGGG 28
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 25.4 bits (53), Expect(2) = 2.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 523 PGGKPPPPP 497
PGG PPPPP
Sbjct: 938 PGGPPPPPP 946
Score = 23.0 bits (47), Expect(2) = 2.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 679 PPPXXXXPPPKKRPXPXXGGGGGP 608
PPP PP P P G GGP
Sbjct: 921 PPPRPPGAPP---PPPPPGKPGGP 941
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 706 PXXXFFFXXPPPXXXXPPPKKRPXPXXGGGGG 611
P FF PPP PPP P GGGGG
Sbjct: 70 PPAAFFAAVPPP----PPPPFEYYPAVGGGGG 97
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 688 FXXPPPXXXXPPPKKRPXPXXGGGGGP 608
F PP PPP P GGGGP
Sbjct: 55 FQLPPDAAPPPPPPPPPSSAAAGGGGP 81
>03_01_0391 - 3030532-3031344,3033177-3033434
Length = 356
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 122 GRGPAEPWQG-LRKATXVGPFXXXXXXXFFRGLXGARXPPYEGSPAAKKGAP 274
G G EPW G LR +GP R G PP E +PAA G P
Sbjct: 32 GGGGVEPWAGRLRAQPRLGPIAA-------RPHDGVSAPPREAAPAAAVGPP 76
>07_01_0439 + 3333654-3334217
Length = 187
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 679 PPPXXXXPPPKKRPXPXXGGGGG 611
PPP PP K R GGGGG
Sbjct: 38 PPPPASRPPKKPRVVASGGGGGG 60
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 679 PPPXXXXPPPKKRPXPXXGGGGG 611
PPP PPKK GGGGG
Sbjct: 37 PPPPPASRPPKKPRVVASGGGGG 59
>04_04_0351 + 24615858-24616448
Length = 196
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 679 PPPXXXXPPPKKRPXPXXGGGGG 611
P P PPPKK P G G G
Sbjct: 3 PEPPASPPPPKKMSPPGAGAGAG 25
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -2
Query: 706 PXXXFFFXXPPPXXXXPPPKKRPXP--XXGGGGG 611
P ++ PPP P P+ P P GGGGG
Sbjct: 49 PCNPSYYPPPPPPVVTPTPQCPPPPSYPSGGGGG 82
>11_01_0252 + 1934505-1935032,1936001-1936957
Length = 494
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 612 PPPPPXXGXGLFFGGGXXXXGGG 680
PPPPP + GGG GGG
Sbjct: 64 PPPPPPLNWPMAGGGGGGSGGGG 86
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 679 PPPXXXXPPPKKRPXPXXGGGGG 611
PPP P P P GGGGG
Sbjct: 55 PPPPPTQPAPPPPPPARSGGGGG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,785,364
Number of Sequences: 37544
Number of extensions: 434067
Number of successful extensions: 1823
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -