Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I08
         (803 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK096970-1|BAC04915.1|  485|Homo sapiens protein ( Homo sapiens ...    31   4.9  
Y08766-1|CAA70019.1|  638|Homo sapiens SF1-Bo isoform protein.         25   8.0  
D26120-2|BAA05117.1|  623|Homo sapiens ZFM1 protein protein.           25   8.0  
AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.             30   8.5  
AC003110-2|AAB86655.1|  990|Homo sapiens PGCN_HUMAN protein.           30   8.5  
AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein p...    30   8.5  

>AK096970-1|BAC04915.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39651 fis, clone SMINT2005161, highly similar to
           Mus musculus ES18 mRNA. ).
          Length = 485

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 691 FFXXPPPXXXXPPPKKRPXPXXGGGGGP 608
           F+  PPP    PPP+ RP P    G  P
Sbjct: 80  FYPVPPPPLPPPPPQCRPFPGTDAGERP 107


>Y08766-1|CAA70019.1|  638|Homo sapiens SF1-Bo isoform protein.
          Length = 638

 Score = 25.0 bits (52), Expect(2) = 8.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 679 PPPXXXXPPPKKRPXPXXGGGGGP 608
           PPP    PPP     P   G  GP
Sbjct: 421 PPPWMQPPPPPMNQGPHPPGHHGP 444



 Score = 23.8 bits (49), Expect(2) = 8.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 523 PGGKPPPPP 497
           P G+PPPPP
Sbjct: 485 PSGQPPPPP 493


>D26120-2|BAA05117.1|  623|Homo sapiens ZFM1 protein protein.
          Length = 623

 Score = 25.0 bits (52), Expect(2) = 8.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 679 PPPXXXXPPPKKRPXPXXGGGGGP 608
           PPP    PPP     P   G  GP
Sbjct: 421 PPPWMQPPPPPMNQGPHPPGHHGP 444



 Score = 23.8 bits (49), Expect(2) = 8.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 523 PGGKPPPPP 497
           P G+PPPPP
Sbjct: 485 PSGQPPPPP 493


>AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.
          Length = 1321

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 209 RGLXGARXPPYEGSPAAKKGAPPG 280
           +G  GA  PP++ SP  K   PPG
Sbjct: 908 QGTSGASVPPHQSSPLGKPAVPPG 931


>AC003110-2|AAB86655.1|  990|Homo sapiens PGCN_HUMAN protein.
          Length = 990

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 209 RGLXGARXPPYEGSPAAKKGAPPG 280
           +G  GA  PP++ SP  K   PPG
Sbjct: 908 QGTSGASVPPHQSSPLGKPAVPPG 931


>AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein
           protein.
          Length = 1335

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 209 RGLXGARXPPYEGSPAAKKGAPPG 280
           +G  GA  PP++ SP  K   PPG
Sbjct: 922 QGTSGASVPPHQSSPLGKPAVPPG 945


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,780,402
Number of Sequences: 237096
Number of extensions: 2428722
Number of successful extensions: 7423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6997
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)