Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I07
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    37   0.003
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.4  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 447 MGGLYGVGRAASCPPALVTLSYXXXXXARTVAW---VGKGIVXDTGGLSIK 304
           M GL  V   +  PP  + + Y     ++   W   VGKG+  D+GG+SIK
Sbjct: 242 MNGLLTVNAGSDIPPRFLEVQYIGKEKSKDDGWLGLVGKGVTFDSGGISIK 292


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -1

Query: 257 LAESLERLYHDDDINLSLMGKAKDFSPY 174
           L  S E+L+ DD++++ ++ ++  F+P+
Sbjct: 413 LEGSTEKLHPDDELDIGVVSQSGQFAPF 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,824
Number of Sequences: 5004
Number of extensions: 29815
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)