Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I05
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.91 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 463  PPXPXPPPXXPXXXXTXTAXPXPXPXXXPP 552
            PP P P    P      TA P P P   PP
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 463  PPXPXPPPXXPXXXXTXTAXPXPXPXXXPP 552
            PP P P    P    +  A P P P   PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 463  PPXPXPPPXXPXXXXTXTAXPXPXPXXXPP 552
            PP P P    P    +  A P P P   PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/54 (25%), Positives = 15/54 (27%)
 Frame = +1

Query: 463  PPXPXPPPXXPXXXXTXTAXPXPXPXXXPPXXXXXPXXXXXXPXPXXXXPXXXP 624
            PP P P    P    +  A P P P    P            P P    P   P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 463  PPXPXPPPXXPXXXXTXTAXPXPXPXXXPP 552
            PP P P    P       A P P P   PP
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +1

Query: 463  PPXPXPPPXXPXXXXTXTAXPXPXPXXXPPXXXXXPXXXXXXPXPXXXXP 612
            PP P P    P      TA P P P    P            P P    P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/54 (25%), Positives = 14/54 (25%)
 Frame = +1

Query: 463  PPXPXPPPXXPXXXXTXTAXPXPXPXXXPPXXXXXPXXXXXXPXPXXXXPXXXP 624
            PP P P    P       A P P P    P            P P    P   P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/72 (23%), Positives = 19/72 (26%)
 Frame = +3

Query: 462 PPXXXPXXXXXXPXXNTNRPXXPXPXXXXXXXXPXPXXXXXPXXXPXXXPXXXPXPXPXX 641
           PP   P      P    + P  P          P P     P   P   P       P  
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP-----SLPSA 193

Query: 642 XXPLPPXRXXPP 677
             P+PP    PP
Sbjct: 194 VPPMPPKVPPPP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,833
Number of Sequences: 5004
Number of extensions: 14871
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)