Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I04
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...   113   3e-26
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.18 
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    28   1.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.2  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.2  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   9.2  

>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score =  113 bits (272), Expect = 3e-26
 Identities = 63/147 (42%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
 Frame = -3

Query: 653 TERADIAFRLALSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDVGAFER 474
           TE  + A  L+++ +L  D+Y+ GELL HP+   L GT +EW  +LV A++VGD+  FER
Sbjct: 197 TELVERAVDLSVAAILG-DIYNFGELLLHPVFELLVGTQHEWLHDLVIAMNVGDLPLFER 255

Query: 473 IRAKSN-CDELHKADRQLRQKIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELL 297
           +  + N    L  +   L QKI ++ L+E+ F    +QR L+F+ IAR  RIP +EVELL
Sbjct: 256 LMGQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELL 315

Query: 296 IMKALAEKLIRGHIDQVRSCATVQWVR 216
           IM+AL+  LI G ID+V    T+  V+
Sbjct: 316 IMRALSVGLITGVIDEVTQIVTISSVQ 342


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 20/89 (22%), Positives = 41/89 (46%)
 Frame = +1

Query: 478 SKAPTSPTDTALTSSQAHSLGVPLRECRIG*ANNSPKSYTSGASTPERASLKAISARSVA 657
           S +P+S + + LTSS   +  +P         ++S  S +S ++    +S  +I + S +
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278

Query: 658 GRASPPVGAPTYRXAARVXTXXGTTDSVI 744
             +SP   + T   ++   +   +T S I
Sbjct: 279 SSSSPTSTSSTISSSSSSSSSPTSTSSTI 307


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 536 WACPSENVGLGEPTIHPNHIHPEPALQREL 625
           W CP EN+    PT  P+H+ P  ++ + L
Sbjct: 701 WRCPRENLTKWYPTRLPDHMAPMESINQIL 730


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 365  QRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHI 255
            +  LS + + +E  + +DE+E+     L E+L  GH+
Sbjct: 976  EEALSIQLLQKETMLRIDELEIERNNTLLERLAIGHV 1012


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 469 RILSKAPTSPTDTALTSSQAHSLGVPLRECRIG*ANNSPKSYTS 600
           RI    PT+   T    +   SLG+ + E  +G     P+SYTS
Sbjct: 485 RIRVGGPTNGVLTYTVQADVWSLGLTILEMALGAYPYPPESYTS 528


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 554 SLRGTPNEWACELVKAVSVGD 492
           SLR     WAC++   ++VGD
Sbjct: 91  SLRHVEKSWACKICTFINVGD 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,267
Number of Sequences: 5004
Number of extensions: 52701
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)