Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_I04
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971... 123 1e-28
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 116 2e-26
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 31 1.3
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634 30 1.8
12_02_0315 - 17417161-17417401,17419426-17419616 30 1.8
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 30 1.8
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232... 30 2.4
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 2.4
01_01_1222 + 9877607-9877691,9879235-9879390,9880070-9880148,988... 29 3.1
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 29 5.4
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 28 7.2
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 28 7.2
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 9.5
>01_05_0085 -
17995800-17995985,17996724-17996823,17996919-17997115,
17997836-17997916,17998046-17998492,17998774-17998920
Length = 385
Score = 123 bits (297), Expect = 1e-28
Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 5/201 (2%)
Frame = -3
Query: 683 APTGGEALPATERADIAFRLALSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAV 504
A T E+L + + D+AF L+L+ +L ++Y+ GELLAHPI++SL GT EW +++A
Sbjct: 185 AYTTVESLSESFKLDLAFDLSLAALLGDNIYNFGELLAHPIINSLIGTKVEWVYHMLQAF 244
Query: 503 SVGDVGAFERI-----RAKSNCDELHKADRQLRQKIAILCLMEMAFNKSSSQRKLSFEEI 339
+ G++ ++ + A S L + +R+L +KI ILCLME+ F + S R + I
Sbjct: 245 NTGNLALYQELCKVHNAALSAQPALVQNERKLLEKINILCLMEIIFTRPSEDRTIPLSVI 304
Query: 338 AREARIPLDEVELLIMKALAEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXXXXVDAW 159
A ++ + +VE L+MK+L+ LI G ID+V S V WV+P +DAW
Sbjct: 305 AERTKLSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRERLDAW 364
Query: 158 REAVSAAADLLATVQPDLIIA 96
V + PDL+ A
Sbjct: 365 VGKVHTTLLSVEAETPDLVAA 385
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 116 bits (279), Expect = 2e-26
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 11/207 (5%)
Frame = -3
Query: 683 APTGGEALPATERADIAFRLALSGVLAPDVYDLGELLAHPI------LHSLRGTPNEWAC 522
A T E+L + + D+AF L+L+ +L ++Y+ GELLAHPI ++SL GT EW
Sbjct: 185 AYTTVESLSESFKLDLAFDLSLAALLGDNIYNFGELLAHPINCKASKINSLIGTKVEWVY 244
Query: 521 ELVKAVSVGDVGAFERI-----RAKSNCDELHKADRQLRQKIAILCLMEMAFNKSSSQRK 357
+++A + G++ ++ + A S L + +R+L +KI ILCLME+ F+++S R
Sbjct: 245 HMLQAFNTGNLALYQELCRVHNAALSAQPALVQNERKLLEKINILCLMEIIFSRASEDRT 304
Query: 356 LSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXX 177
+ IA ++ + +VE L+MK+L+ LI G ID+V S V WV+P
Sbjct: 305 IPLSVIAERTKLSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALR 364
Query: 176 XXVDAWREAVSAAADLLATVQPDLIIA 96
+DAW V + PDL+ A
Sbjct: 365 ERLDAWVGKVHTTLLSVEAETPDLVAA 391
>12_02_0137 +
14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 550 RECRIG*ANNSPKSYTSGASTPE--RASLKAISARSVA-GRASPPVG 681
R C +G NN P S + ST E A K+ ARS A ASPP G
Sbjct: 96 RVCLVGVGNNMPSSAAACRSTGETIAAVAKSAQARSAAVALASPPPG 142
>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
Length = 846
Score = 30.3 bits (65), Expect = 1.8
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Frame = -3
Query: 620 LSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDVGAFERI----RAKSNC 453
LS ++AP DL + H + HS+ + LV A V V I A +
Sbjct: 447 LSRIMAPMSSDLLHRIDHEVWHSVVEESMQLVALLVVAPGVTGVRLRREISGNKEAVTTM 506
Query: 452 DELHKAD--RQLRQKIAILCLMEMAFNKSSSQRK--LSFEEIAR 333
D + K + L Q +AI L ++AF+KS S S EE+A+
Sbjct: 507 DSIPKCSKCKPLLQIMAIKILSQLAFDKSLSMSTSVASREELAK 550
>12_02_0315 - 17417161-17417401,17419426-17419616
Length = 143
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 517 SSQAHSLGVPLRECRIG*ANNSPKSYTSGASTPERASLKAISARSVAGRASPP-VGA 684
+ QA G P ++ R G N K YT ++ P + A A + A + PP VGA
Sbjct: 72 TDQAWEFGKPSQKRRFGSQGNEEK-YTRASTEPPAVAAAAAKAAAAAAKRPPPSVGA 127
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 466 ARILSKAPTSPTDTAL--TSSQAHSLG-VPLRECRIG*ANNSPKSYTSGASTPERASLKA 636
A + +P SP+ +L S + SLG V ++ I AN P++ S S P+ +
Sbjct: 123 AAAAATSPASPSGGSLPQNSLRKQSLGKVVVQPSIIVTANPPPRNVVSTTSVPQNSIAAK 182
Query: 637 ISARSVAGRASPP 675
++ SVA + PP
Sbjct: 183 LACSSVAAASPPP 195
>02_02_0658 +
12720873-12720906,12721201-12721664,12723069-12723227,
12723308-12723424,12723570-12723721,12724594-12724685,
12724787-12725464,12725551-12725803,12725804-12725888,
12725969-12726037,12726489-12726668,12726989-12726994,
12727526-12727624
Length = 795
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 515 PVHRPIHWACPSENVGLGEPTIHPNHIHPE 604
PV + +W ++N+ G PT+H +H PE
Sbjct: 387 PVGKSSYWNNRADNIFHGSPTLHNSHSFPE 416
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -3
Query: 470 RAKSNCDELHKADRQLRQKIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIM 291
+A+S+ EL + L KIA+L + + + Q + SFE + + L+ + ++
Sbjct: 443 KAQSSVKELESTNGDLNDKIAVLQNEKNSLSSELQQLEASFENLGNDLEQELERISIMHK 502
Query: 290 KALAEKLIRGHIDQVRSCATVQ 225
+L+ ++ ATVQ
Sbjct: 503 NNEDLELVNSNLQ--NDLATVQ 522
>01_01_1222 +
9877607-9877691,9879235-9879390,9880070-9880148,
9881471-9881711,9881794-9881868,9881960-9882094,
9882634-9882821,9882915-9882983,9883060-9883150,
9883262-9883396,9883675-9883740,9883823-9883935,
9884020-9884110
Length = 507
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 341 IAREARIPLDEVELLIMKALAEKLIRGHIDQV 246
+ E P +VE L++ + + I+GHIDQV
Sbjct: 438 LTEELNFPEKDVEQLLVSLILDNRIQGHIDQV 469
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -3
Query: 464 KSNCDELHKADRQLRQKIAILC--LMEMAFNKSSSQRKL--SFEEIAREARIPLDEV 306
KS CDEL + + L +K A C + E N S+ +R F+E+ A L EV
Sbjct: 61 KSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALSEV 117
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -1
Query: 205 WPGRAPC*RQRGWTRGE--RRSPRPPTCW 125
WP RAP R+ G R R +PRPP+ W
Sbjct: 16 WPARAP--RRGGLLRARAVRAAPRPPSKW 42
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 217 RTHCTVAHDRT*SICPLINFSAKAFMMRSSTSSRGILASRAISSNDSFL*DEDLLKAISI 396
RT CT +R CP I+ A++F + S +L S+ D D+D LK S+
Sbjct: 634 RTSCT---ERVALRCPAIDSVARSFSWEDTNSGSPLLGGLKHSNVDDADYDDDELKCYSL 690
Query: 397 KHRI 408
I
Sbjct: 691 VQEI 694
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 571 ANNSPKSYTSGASTPERASLKAIS---ARSVAGRASPPVG 681
A +SP S +S +STP R ++ A S R +AG +PP G
Sbjct: 112 APSSPSSSSSSSSTPVRDAVAAESQSAPRRLAGGRAPPDG 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,292,353
Number of Sequences: 37544
Number of extensions: 419584
Number of successful extensions: 1324
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -