Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I03
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 603 GGXPPPPXKXXXFXPPPPXGGXXPPP 526
           GG PPPP       PPP   G  PPP
Sbjct: 759 GGPPPPP-------PPPGVAGAGPPP 777



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -3

Query: 621 PXFFXGGGXPPPPXKXXXFXPPPPXGGXXPPP 526
           P    GG  PPPP        PPP     PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -3

Query: 600 GXPPPPXKXXXFXPP--PPXGGXXPPPXF 520
           G PPPP     F PP  PP     PPP +
Sbjct: 7   GNPPPPPPPPGFEPPSQPP---PPPPPGY 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,170
Number of Sequences: 5004
Number of extensions: 16106
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)