Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_H22
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.58 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.58 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.2  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.2  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 337 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +1

Query: 394 PSPAXXLXXXXPGXPPXAPXLPXXXXSXRXXPXXXLXGXSPPLPPP 531
           P PA  +    P   P  P  P         P   + G  PP PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 33/138 (23%), Positives = 36/138 (26%), Gaps = 4/138 (2%)
 Frame = +3

Query: 393 PXXRRPPXXXXPRXXPX--RPXPPXXXXXXXVXPXXXXXXXX--PAPXXPPLXXSXXXXP 560
           P  R  P    PR  P   R  PP         P           AP  PPL  +     
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNA----S 410

Query: 561 RSXXPXPXSPXXXXAXXPXXAPPXXXXXXXXXRLPGXXXPXXXPGXRPXPAPXXXXXXXR 740
           R+  P   +P       P   PP                P   P   P PA         
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPA-GMPAAPPL 469

Query: 741 XPXGAAPXXAPXPLXXXP 794
            P   AP  AP P    P
Sbjct: 470 PPAAPAPPPAPAPAPAAP 487


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 380 PXXXPXXPPXXXXXXPPXXPRXPPP 454
           P   P  PP      PP  P  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 328 PPPLRSLISNLSNTCDLTPLPEW 260
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,254
Number of Sequences: 5004
Number of extensions: 17049
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)