Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_H22
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.2
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 2.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 2.2
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 2.9
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 2.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.1
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 5.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 6.7
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/79 (27%), Positives = 25/79 (31%)
Frame = +3
Query: 393 PXXRRPPXXXXPRXXPXRPXPPXXXXXXXVXPXXXXXXXXPAPXXPPLXXSXXXXPRSXX 572
P PP PR P R PP V P P PP+ + PR+
Sbjct: 560 PPRTIPPRTEAPRTEPPRTEPPKTEAPRTVRPKTEAPMTVPPRTEPPMTEA----PRTEV 615
Query: 573 PXPXSPXXXXAXXPXXAPP 629
P P P APP
Sbjct: 616 PMTEPP---KTEPPRTAPP 631
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/61 (24%), Positives = 16/61 (26%)
Frame = +3
Query: 408 PPXXXXPRXXPXRPXPPXXXXXXXVXPXXXXXXXXPAPXXPPLXXSXXXXPRSXXPXPXS 587
PP PR P + PP P P P PP P P
Sbjct: 367 PPKTDPPRTEPPKTEPPTTEPPKIEPPRTEPPKTEPPPTEPPKTEPPKTTPPKTEPPTTE 426
Query: 588 P 590
P
Sbjct: 427 P 427
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.2
Identities = 33/146 (22%), Positives = 35/146 (23%)
Frame = -1
Query: 799 GXGXXXRGXGAXXGAAPXGXRXXXXXXXGAGXGRXPGXXXGXXXPGRRXXXXXXXXXGGA 620
G G G G G G G G G G G G GG+
Sbjct: 86 GGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGG--GGCGGGGGGGCGGGS 143
Query: 619 XXGXXAXXXQGEXGXGXXXRGXXXXXXXXGGXXGAGXXXXXXXXGXTXXXXXXXGGXGRX 440
G G G G G GG G G G GG G
Sbjct: 144 SGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYA 203
Query: 439 GXXRGXXXXGGRRXXGXXXRXXXPAG 362
G GG G P+G
Sbjct: 204 VAPSGGGGCGGGGSSGGGGYASAPSG 229
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.2
Identities = 33/146 (22%), Positives = 35/146 (23%)
Frame = -1
Query: 799 GXGXXXRGXGAXXGAAPXGXRXXXXXXXGAGXGRXPGXXXGXXXPGRRXXXXXXXXXGGA 620
G G G G G G G G G G G G GG+
Sbjct: 86 GGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGG--GGCGGGGGGGCGGGS 143
Query: 619 XXGXXAXXXQGEXGXGXXXRGXXXXXXXXGGXXGAGXXXXXXXXGXTXXXXXXXGGXGRX 440
G G G G G GG G G G GG G
Sbjct: 144 SGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYA 203
Query: 439 GXXRGXXXXGGRRXXGXXXRXXXPAG 362
G GG G P+G
Sbjct: 204 VAPSGGGGCGGGGSSGGGGYASAPSG 229
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.9 bits (64), Expect = 2.2
Identities = 31/121 (25%), Positives = 34/121 (28%)
Frame = -1
Query: 754 APXGXRXXXXXXXGAGXGRXPGXXXGXXXPGRRXXXXXXXXXGGAXXGXXAXXXQGEXGX 575
+P G R +G PG G GR GG+ G G G
Sbjct: 26 SPWGFRPSPFFGGRSGGWGRPGWGGGGPGWGR--------GGGGSGWGGGRGGGWGNNGG 77
Query: 574 GXXXRGXXXXXXXXGGXXGAGXXXXXXXXGXTXXXXXXXGGXGRXGXXRGXXXXGGRRXX 395
G G GG G G G GG GR G G GG R
Sbjct: 78 GGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGG--GGGRGGGGRGR 135
Query: 394 G 392
G
Sbjct: 136 G 136
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -2
Query: 531 GGXXGRGXPXXXXXXGXPXXXXXXGEGGGXRGXXGGXXXQXXGGXXGXXXG 379
GG G G P G G+GG G GG Q GG G G
Sbjct: 186 GGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGG 236
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -2
Query: 531 GGXXGRGXPXXXXXXGXPXXXXXXGEGGGXRGXXGGXXXQXXGGXXGXXXG 379
GG G G P G G+GG G GG Q GG G G
Sbjct: 224 GGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGG 274
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 392 PXXPPXXXXXXPPXXPRXPPPSPXXXXXXGXP 487
P PP PP P PPP P G P
Sbjct: 91 PPPPPPKPTIRPPPIPASPPPRPPASEPVGIP 122
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 392 PXXPPXXXXXXPPXXPRXPPPSPXXXXXXGXP 487
P PP PP P PPP P G P
Sbjct: 313 PPPPPPKPTIRPPPIPASPPPRPPASEPVGIP 344
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 3.9
Identities = 31/131 (23%), Positives = 31/131 (23%)
Frame = -1
Query: 799 GXGXXXRGXGAXXGAAPXGXRXXXXXXXGAGXGRXPGXXXGXXXPGRRXXXXXXXXXGGA 620
G G G G G AP G G G G G G GG
Sbjct: 38 GGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGG-------GCGGGGG 90
Query: 619 XXGXXAXXXQGEXGXGXXXRGXXXXXXXXGGXXGAGXXXXXXXXGXTXXXXXXXGGXGRX 440
G G G G GG G G G GG G
Sbjct: 91 GCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCG 150
Query: 439 GXXRGXXXXGG 407
G G GG
Sbjct: 151 GGGGGCGGGGG 161
Score = 28.7 bits (61), Expect = 5.1
Identities = 29/125 (23%), Positives = 29/125 (23%)
Frame = -1
Query: 799 GXGXXXRGXGAXXGAAPXGXRXXXXXXXGAGXGRXPGXXXGXXXPGRRXXXXXXXXXGGA 620
G G G G G G G G G G G P GG
Sbjct: 68 GGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGG 127
Query: 619 XXGXXAXXXQGEXGXGXXXRGXXXXXXXXGGXXGAGXXXXXXXXGXTXXXXXXXGGXGRX 440
G G G G G GG G G G GG G
Sbjct: 128 GCGGGCG---GGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGG 184
Query: 439 GXXRG 425
G G
Sbjct: 185 GCGGG 189
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/125 (20%), Positives = 33/125 (26%)
Frame = +3
Query: 408 PPXXXXPRXXPXRPXPPXXXXXXXVXPXXXXXXXXPAPXXPPLXXSXXXXPRSXXPXPXS 587
PP P P PP + P AP PP+ + P P
Sbjct: 488 PPPPPMPSINGHAPNPPPPPPLLGIAPMSTN-----APPPPPMPGMAPLSTGAPTPPPPP 542
Query: 588 PXXXXAXXPXXAPPXXXXXXXXXRLPGXXXPXXXPGXRPXPAPXXXXXXXRXPXGAAPXX 767
P P PP + G P P P P + P +P
Sbjct: 543 PVGMANGGP-PPPPPLPLDLLKGAVAGLKSVPGGPPPPPPPPPPSFMFNGKVPNAFSPGT 601
Query: 768 APXPL 782
+ P+
Sbjct: 602 STSPV 606
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/116 (21%), Positives = 28/116 (24%), Gaps = 1/116 (0%)
Frame = +1
Query: 436 PPXAPXLPXXXXSXRXXPXXXLXGXSP-PLPPPXXXXXAXXXXXXXXXVPXPPXXXXXXX 612
PP P P + P G +P P PPP P PP
Sbjct: 261 PPVPP--PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
Query: 613 XPXXXXXXXPPXXXXAXXGPXXLXXXXGXAXXPLPXXXXXSXXRXXXPRXXRPPXP 780
P P P + G P P P RPP P
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/116 (21%), Positives = 28/116 (24%), Gaps = 1/116 (0%)
Frame = +1
Query: 436 PPXAPXLPXXXXSXRXXPXXXLXGXSP-PLPPPXXXXXAXXXXXXXXXVPXPPXXXXXXX 612
PP P P + P G +P P PPP P PP
Sbjct: 271 PPVPP--PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
Query: 613 XPXXXXXXXPPXXXXAXXGPXXLXXXXGXAXXPLPXXXXXSXXRXXXPRXXRPPXP 780
P P P + G P P P RPP P
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 384
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/103 (24%), Positives = 27/103 (26%)
Frame = -1
Query: 715 GAGXGRXPGXXXGXXXPGRRXXXXXXXXXGGAXXGXXAXXXQGEXGXGXXXRGXXXXXXX 536
G+G G G G G GG G G+ G G G
Sbjct: 81 GSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGM 140
Query: 535 XGGXXGAGXXXXXXXXGXTXXXXXXXGGXGRXGXXRGXXXXGG 407
GG G G G GG G G G GG
Sbjct: 141 GGGPGGYGMGGYGGGGGG-GGDFGGYGGGGMGGGGYGGGGDGG 182
Score = 28.7 bits (61), Expect = 5.1
Identities = 30/132 (22%), Positives = 30/132 (22%), Gaps = 1/132 (0%)
Frame = -1
Query: 799 GXGXXXRGXGAXXGAAPXGXRXXXXXXXGAGXGRXP-GXXXGXXXPGRRXXXXXXXXXGG 623
G G G G G G G G G G G G GG
Sbjct: 113 GYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGG 172
Query: 622 AXXGXXAXXXQGEXGXGXXXRGXXXXXXXXGGXXGAGXXXXXXXXGXTXXXXXXXGGXGR 443
G G G G G GG G G G G G
Sbjct: 173 GGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGG 232
Query: 442 XGXXRGXXXXGG 407
G G GG
Sbjct: 233 YGPGGGYGMGGG 244
Score = 27.9 bits (59), Expect = 8.9
Identities = 27/121 (22%), Positives = 27/121 (22%)
Frame = -1
Query: 799 GXGXXXRGXGAXXGAAPXGXRXXXXXXXGAGXGRXPGXXXGXXXPGRRXXXXXXXXXGGA 620
G G G G P G G G G G G G GG
Sbjct: 128 GYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGG 187
Query: 619 XXGXXAXXXQGEXGXGXXXRGXXXXXXXXGGXXGAGXXXXXXXXGXTXXXXXXXGGXGRX 440
G G G G G GG G G GG G
Sbjct: 188 FGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYGMGGGGGG 247
Query: 439 G 437
G
Sbjct: 248 G 248
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +2
Query: 392 PXXPPXXXXXXPPXXPRXP-PPSPXXXXXXGXPXXXXXXGXPRPXXPP 532
P PP P P+ PPSP P G P P PP
Sbjct: 206 PSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPP 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,139,134
Number of Sequences: 27780
Number of extensions: 169994
Number of successful extensions: 849
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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