Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_H21
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.061
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.14
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.75
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.3
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.0
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.0
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.061
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = +3
Query: 378 PPXAPXPXLPXXHXXPP--RPPR--XPXXXXSRAXPXP--XXXXPRXXXPPXXPATP 530
PP AP P P PP PPR P + A P P P PP PA P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 356 PXHPXPXPPXSPXAPSPXXPXXTPXAPPXP 445
P P PP +P PS P P PP P
Sbjct: 177 PAAPVKSPPSAPSLPS-AVPPMPPKVPPPP 205
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/53 (26%), Positives = 17/53 (32%)
Frame = +2
Query: 356 PXHPXPXPPXSPXAPSPXXPXXTPXAPPXPXTXXLXGXPXXXX*XPXXAXPAP 514
P P P P +P PS P + PP + P P P P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS-LPSAVPPMP 198
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.14
Identities = 26/85 (30%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Frame = -2
Query: 616 GGSGRPXXXXXXXXGXXXXXGSGXXXXXXGVAGXXGGXXXRGXSXXGXGXAREXXXXGXR 437
GGSG P G G G G G G G G G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG------GFG 248
Query: 436 GGLGGXXWXXGRXGXGAXG-GXXXW 365
GGLGG G G G G G W
Sbjct: 249 GGLGGFGGGPGGFGGGPGGHGGPGW 273
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Frame = +2
Query: 356 PXHPXPXPPXSPXAPSPXXPXXTPXAPPXPXTXXL-----XGXPXXXX*XPXXAXPAPXP 520
P P PP P + P P P APP P + + G P P P P P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 28.7 bits (61), Expect = 0.99
Identities = 22/71 (30%), Positives = 24/71 (33%)
Frame = +3
Query: 363 TXXXIPPXAPXPXLPXXHXXPPRPPRXPXXXXSRAXPXPXXXXPRXXXPPXXPATPXXXX 542
T +PP AP P LP P PP P + A P P P PA P
Sbjct: 419 TPPSLPPSAP-PSLP-----PSAPPSLPMGAPA-APPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 543 XXPEPXXXXXP 575
P P P
Sbjct: 472 AAPAPPPAPAP 482
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.75
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +2
Query: 356 PXHPXPXPPXSPXAPSPXXPXXTPXAPPXPXTXXLXGXPXXXX*XPXXAXPAPXP 520
P HP PP P + +P P PP P + P A P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAP-PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = -2
Query: 529 GVAGXXGGXXXRGXSXXGXGXAREXXXXGXRGGLGGXXWXXGRXGXGAXGG 377
G G RG G G +R RGG GG G G G+ GG
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGG--SRGGFGGGSRGG 177
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = -2
Query: 529 GVAGXXGGXXXRGXSXXGXGX-AREXXXXGXRGGLGGXXWXXGRXG--XGAXGG 377
G G G RG S G G +R G RGG GG R G G+ GG
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 356 PXHPXPXPPXSPXAPSPXXPXXTPXAPPXP 445
P P P P P P P P P PP P
Sbjct: 99 PEEPLPREPPLPNEPVPEEP--LPGEPPLP 126
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 356 PXHPXPXPPXSPXAPSPXXPXXTPXAPPXP 445
P P P P P P P P P PP P
Sbjct: 115 PEEPLPGEPPLPDEPVPEEP--LPGEPPLP 142
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 320 LRSLISNLSNTCDLTPLPEWSCEQSAW 240
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,057
Number of Sequences: 5004
Number of extensions: 13757
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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