Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_H17
         (1324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    26   2.3  
07_01_0080 + 587674-588510                                             26   2.6  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 25.8 bits (54), Expect(2) = 2.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 950 PXPPXPPPPP 921
           P PP PPPPP
Sbjct: 634 PPPPPPPPPP 643



 Score = 23.4 bits (48), Expect(2) = 2.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 959 KKXPXPPXPPPP 924
           +  P PP PPPP
Sbjct: 615 RSVPPPPPPPPP 626


>07_01_0080 + 587674-588510
          Length = 278

 Score = 25.8 bits (54), Expect(2) = 2.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 950 PXPPXPPPPP 921
           P PP PPPPP
Sbjct: 111 PPPPPPPPPP 120



 Score = 25.8 bits (54), Expect(2) = 9.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 950 PXPPXPPPPP 921
           P PP PPPPP
Sbjct: 112 PPPPPPPPPP 121



 Score = 23.4 bits (48), Expect(2) = 2.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 956 KXPXPPXPPPP 924
           + P PP PPPP
Sbjct: 89  RRPPPPPPPPP 99



 Score = 21.4 bits (43), Expect(2) = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 959 KKXPXPPXPPP 927
           ++ P PP PPP
Sbjct: 89  RRPPPPPPPPP 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,803,869
Number of Sequences: 37544
Number of extensions: 145174
Number of successful extensions: 5367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2290
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4143716112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)