Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_H14
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    29   0.66 
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    28   1.2  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   1.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   6.1  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   8.1  

>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 659 DLINIYRSRKAPYRRTHILPGTTIELTCEAAGS-PAPSVHWFKNDSPVYEYDVESNELID 483
           DL      +  P+R TH + G+ + +  E   +    SV  FK+  P+YE DV      +
Sbjct: 372 DLAEYLVRKGVPFRETHHISGSAVRMAEERNTTIDKLSVEDFKSLHPLYEEDVADVFNYE 431

Query: 482 SSPTSIARISST 447
           SS      I  T
Sbjct: 432 SSVEKRCAIGGT 443


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 608 ILPGTTIELTCEAAGSPAPSVHWFKNDSP 522
           ++PG T + TC   GS   +V++ KN  P
Sbjct: 425 LIPGCTYDNTCSQRGSVIANVYFAKNKQP 453


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -1

Query: 238 AASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRR 59
           A S D+P  +SPGS D+     R    R    +S   PP+  +T T  L++    +A   
Sbjct: 203 AKSDDSPVVKSPGSNDKPSASPRISV-RSLGNSSVVRPPTRTST-TRPLSRVNVTNASGS 260

Query: 58  LKHSSTPLNPSR 23
           +  +ST  +PS+
Sbjct: 261 ISKNST--SPSK 270


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 249 HPVADVVHVGAIGDHDARLQREQLSAFRELSSAIC 353
           H ++     GAI  HD R+   Q+   +  SS +C
Sbjct: 274 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 308


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 127 PPSSGATWTSTLAKPKTLSARRRLKHSSTPLN 32
           P  S   W +TL KP+++    R    S+P+N
Sbjct: 885 PHWSEHIWLTTLKKPQSIHVSGRFPQVSSPVN 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,177
Number of Sequences: 5004
Number of extensions: 52671
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)