Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_H14
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0258 + 27950196-27950749,27953670-27954570 31 1.2
09_04_0164 + 15265878-15268701,15268782-15269200 30 2.1
06_01_0843 - 6406538-6406679,6407659-6407945 29 2.8
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 29 2.8
09_02_0001 - 2857651-2857923,2858089-2858283 29 3.7
06_03_0188 - 17691582-17692241 29 3.7
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 29 4.8
02_03_0411 - 18739279-18739902,18741471-18741671 29 4.8
07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640 28 6.4
01_06_1740 - 39575614-39576981 28 6.4
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 28 8.5
11_01_0340 + 2534998-2535660 28 8.5
08_01_0821 + 7966587-7966832 28 8.5
06_03_0416 + 20568087-20568702,20568767-20570313 28 8.5
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44... 28 8.5
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = -1
Query: 247 CSRAASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 68
C RAA+ + SPR+ S P R R +W+ P S AT +L P +L+A
Sbjct: 115 CHRAAAAASASPRNASSLPAPAPASPRRTFRPDKSRTWAPIPCSSATCRESL--PFSLAA 172
Query: 67 RRRLKHSSTPLNP 29
+TP NP
Sbjct: 173 ------CATPANP 179
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 542 WFKNDSPVYEYDVESNELIDSSPTSI 465
W N + +Y DVE+N L D PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332
>06_01_0843 - 6406538-6406679,6407659-6407945
Length = 142
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 556 AGDPAASQVNSIVVPGSMCVRR*GALRDR*IFMRSIXFCLH 678
+GD A ++ + + +C RR G RD I+M + FC H
Sbjct: 64 SGDFAVAETAAFLKACGICNRRLGPGRDTFIYMGEVAFCSH 104
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/96 (29%), Positives = 44/96 (45%)
Frame = -1
Query: 343 LLSSRNALSCSR*SLASWSPIAPTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLKRTR 164
+L +R L+ + LA +SP + SA+ CS AAS + S S RM T
Sbjct: 1 MLFARRPLATAASHLAPFSPPLLLFFASASSSCSSAASPSSASGPRGCSAVRM----ETG 56
Query: 163 A*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRL 56
A P S+GA W++ +P+T+S + +
Sbjct: 57 AVE---------PASTGAIWSTPSVEPRTISVGKEI 83
>09_02_0001 - 2857651-2857923,2858089-2858283
Length = 155
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 259 ATGWCSRAASRDTPSPRSPGSTDRMCP 179
ATGWCS + P R PG+ +R P
Sbjct: 98 ATGWCSASRRSLLPVVRHPGTIERPLP 124
>06_03_0188 - 17691582-17692241
Length = 219
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 277 PTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLK 173
P WTT+ T A+ R+T P P + + PL+
Sbjct: 35 PPWTTTTTTMAVPASPRETAFPTKPSNANVSSPLR 69
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 566 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 417
GSP P +H F+N++ E ++ SN +SS I ++ T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282
>02_03_0411 - 18739279-18739902,18741471-18741671
Length = 274
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -1
Query: 241 RAASRDTPSP--RSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 68
R++S +PSP RS S+ R C R R A A+ S SSG T S++ +A
Sbjct: 87 RSSSAYSPSPASRSASSSSRRCSRARGRGGGGGAAAAASTTTSSGYTSVSSVGAVTAAAA 146
Query: 67 RRRLKHSS 44
R SS
Sbjct: 147 AWRSHDSS 154
>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
Length = 468
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1
Query: 229 RDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRLKH 50
R T S R +D+ C R +R + +S + T+++A P + SAR R H
Sbjct: 216 RRTHSSRVVPGSDKPCVTSRP------SRFDYIGSSASSISMTASIASPSSSSARPRAPH 269
Query: 49 SSTP 38
S+ P
Sbjct: 270 STAP 273
>01_06_1740 - 39575614-39576981
Length = 455
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 182 PIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFG 69
P+ + PR VLRS LV+S + + D Y Q + G
Sbjct: 369 PLHEGPRGSVLRSVHLVVSEVTMTQEDVYEWQNATSKG 406
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = -1
Query: 253 GWCSRAASRD-----TPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLA 89
GW R S+ TPS S ++ CP+K+T+ FA A+ S S+ +T L+
Sbjct: 32 GWMIRCFSKRVGIQFTPSAASAAASASSCPVKKTQCPCSFAVAT-SISSSTCTHFTPQLS 90
Query: 88 KPKTLSARRRLK 53
LS++ + K
Sbjct: 91 SAHLLSSQLKEK 102
>11_01_0340 + 2534998-2535660
Length = 220
Score = 27.9 bits (59), Expect = 8.5
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = -1
Query: 268 TTSATGWCSRAASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTS--- 98
++S+TG SRAA+ + P SP S+ K RA C W + +S
Sbjct: 65 SSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSC---ERWDTNKAKNQIISSGRL 121
Query: 97 TLAKPKTLSAR---RRLKHSSTPLNPSRR 20
T A + +AR ++K+++ P N ++R
Sbjct: 122 TPASSSSTNARWDMNKVKNTAPPSNSNKR 150
>08_01_0821 + 7966587-7966832
Length = 81
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 259 ATGWCSRAASRDTPSPRSPGSTDR 188
A GWC R+T S ++PG+ R
Sbjct: 10 AMGWCGAEEERETASRKAPGACPR 33
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -3
Query: 215 PKITWFNGQNVPIEKNPRMKVLRSGELVI----SSLLWS 111
P+I WF ++ P+ +N ++ G+LV+ +L+WS
Sbjct: 90 PEIVWFANRDHPVGENATVQFTELGDLVLYDADGTLVWS 128
>05_01_0062 +
440239-440325,441107-441183,441416-441643,441953-442176,
442250-442398,443102-443279,443348-443428,443523-443669,
443759-444483
Length = 631
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 168 VLFNGHILSVEPGDLGLGVSLDAAREHHPV 257
+ NG+ V+ GDLGL LD AR H +
Sbjct: 175 IFVNGNQGEVKIGDLGLATILDNARSAHSI 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,767,500
Number of Sequences: 37544
Number of extensions: 412722
Number of successful extensions: 1426
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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