Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_H08
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   5.6  
06_01_0486 - 3455030-3455770                                           28   7.4  

>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/75 (24%), Positives = 19/75 (25%)
 Frame = +3

Query: 477  PXPXXXPXXPXXXTXPXPLXXXXXXXXHXXPIXPHPTXPKPXXXXXPXSPXXTXSXHPXX 656
            P P   P  P     P PL           P    P  P P     P  P  + S  P  
Sbjct: 1124 PLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPP 1183

Query: 657  RXXXXXXXPPXXSXP 701
                    PP    P
Sbjct: 1184 PPPPLPSGPPPQPAP 1198


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +3

Query: 483 PXXXPXXPXXXTXPXPLXXXXXXXXHXXPIXPHPTXPKPXXXXXPXSPXXT 635
           P   P  P     P P            P  P PT P P     P SP  T
Sbjct: 106 PPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPSPPPYVPPPSPPAT 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,489,397
Number of Sequences: 37544
Number of extensions: 118530
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)