Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_H07
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   5.4  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -1

Query: 558 GGGXLGGXGXXXPXGGXXXXGGLG*XGGXGGVGEXFG 448
           GGG  GG G     GG    GG G   G G  G   G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 597 GSGXWXGXXXGXXGGGXLGGXGXXXPXGGXXXXGGLG*XGGXGGVG 460
           GSG       G  G G  GG G      G    G  G  GG GG G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -3

Query: 556 GGXPGGVRXXXAXRGXXXGGGVGVXWGXXGGR 461
           GG  GG       RG   GGG G   G  GGR
Sbjct: 19  GGFNGGRGGFGGGRGGARGGGRGGARGGRGGR 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,069
Number of Sequences: 5004
Number of extensions: 12276
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)