Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_H01
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    34   0.13 
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   5.0  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   6.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   6.6  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   6.6  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    28   6.6  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    28   8.7  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
 Frame = +2

Query: 491 PPXSXEXXXPXQPXPPXXXPXPPIIPPXXXPXXIPXXXXSXXXRRNXXLXPPXKPPXP-X 667
           PP       P    PP   P PPI PP   P   P             + PP  PP P  
Sbjct: 27  PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPP--PPMCPPPPPPPPPPMCPPPPPPMPSY 84

Query: 668 XXCXXXRPMP 697
             C    P P
Sbjct: 85  SPCQSYAPAP 94


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +3

Query: 519 PXNPXXPXPXPHPQSSPXXXSXXTFXPXXXXPXFAATXXSPPPKNXXP 662
           P  P  P P P P +SP         P    P   A    PPP    P
Sbjct: 82  PYVPPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTP 129


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/65 (26%), Positives = 20/65 (30%)
 Frame = +2

Query: 389 GXXGPPPXXKXXSXXLXXXPXSXXPSXXXFFXKXPPXSXEXXXPXQPXPPXXXPXPPIIP 568
           G  G  P        +   P    P+        PP S     P  P PP   P PP +P
Sbjct: 255 GYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 314

Query: 569 PXXXP 583
               P
Sbjct: 315 GMPPP 319


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/65 (26%), Positives = 20/65 (30%)
 Frame = +2

Query: 389 GXXGPPPXXKXXSXXLXXXPXSXXPSXXXFFXKXPPXSXEXXXPXQPXPPXXXPXPPIIP 568
           G  G  P        +   P    P+        PP S     P  P PP   P PP +P
Sbjct: 265 GYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 324

Query: 569 PXXXP 583
               P
Sbjct: 325 GMPPP 329


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 491 PPXSXEXXXPXQPXPPXXXPXPPIIPPXXXPXXIP 595
           PP   +   P  P P    P  P+IP    P  +P
Sbjct: 776 PPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 810


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 491 PPXSXEXXXPXQPXPPXXXPXPPIIPPXXXPXXIP 595
           PP   +   P  P P    P  P+IP    P  +P
Sbjct: 776 PPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 810


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +2

Query: 527 PXPPXXXPXPPIIPPXXXPXXIPXXXXSXXXRRNXXLXPPXKPPXP 664
           P PP     PP  PP      IP    S    R   + PP   P P
Sbjct: 254 PVPPPVLSIPPPPPPNIPLPTIPQEVQSPPSPRPTSVPPPIPSPGP 299


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +2

Query: 527 PXPPXXXPXPPIIPPXXXPXXIPXXXXSXXXRRNXXLXPPXKPPXP 664
           P PP     PP  PP      IP    S    R   + PP   P P
Sbjct: 254 PVPPPVLSIPPPPPPNIPLPTIPQEVQSPPSPRPTSVPPPIPSPGP 299


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 491 PPXSXEXXXPXQPXPPXXXPXPPIIPPXXXPXXIP 595
           PP   +   P  P P    P  P+IP    P  +P
Sbjct: 359 PPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 393


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = -2

Query: 663 GXGGFXGGXRXXLRRXXXXXXWXGMXXGXSXGGMIGGXGLXXGGWGCXG 517
           G GG+ G                G   G   GG +GG G   GG+G  G
Sbjct: 75  GRGGYGGSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGG 123


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +3

Query: 432 PSXXXPXPXDXPLXFFXPNXRXXPWXXXXPXNPXXPXPXPHPQ 560
           P    P P D P     P  R  PW    P     P P P P+
Sbjct: 51  PPFGPPPPWDRP----PPPWRRPPWHRRPPWGLPPPPPPPEPE 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,904,824
Number of Sequences: 27780
Number of extensions: 137206
Number of successful extensions: 670
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)