Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_G24
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.78
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 1.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.5
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.6
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.78
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 388 PDPXXXPXPPAXPKPXXAPXSXPPP 462
P P P PP+ P P S PPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 704 PPPPPPXXXASXGXFXSXA 760
PPPPPP A+ G F S A
Sbjct: 948 PPPPPPLVSAAGGKFVSPA 966
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 367 PGVXGXXPDPXXXPXPPAXPKPXXAPXSXPPPWXXXXXGXSPXP 498
P V P P P PP P P PPP P P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 650 LXGXXRPXXPVALXXXXXPPPPPPXXXASXG 742
+ G P P + PPPPPP S G
Sbjct: 758 MGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 668 PXXPVALXXXXXPPPPPPXXXASXG 742
P P A PPPPPP A G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAG 774
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +1
Query: 406 PXPPAXPKPXXAPXSXPPPWXXXXXGXSPXPXSTXFPVXLPXPXXG 543
P P P AP S PP G P P + P +P P G
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP-PVPKPSVG 1206
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +1
Query: 370 GVXGXXPDPXXXPXP-PAXPKPXXAPXSXPPPWXXXXXGXSPXPXSTXFPVXLPXP 534
GV P P P P+ P P S PP G P P T +P P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +1
Query: 388 PDPXXXPXP-PAXPKPXXAPXSXPPPWXXXXXGXSPXPXSTXFPVXLPXPXXG 543
P P P PA P P S PP G P P + P +P P G
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP-PVPTPSAG 1225
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/65 (27%), Positives = 20/65 (30%)
Frame = +1
Query: 367 PGVXGXXPDPXXXPXPPAXPKPXXAPXSXPPPWXXXXXGXSPXPXSTXFPVXLPXPXXGX 546
P G P P P PKP A P P G P P + +P P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP-----SGAPPVPKPSVAAPPVPVPSGAP 1140
Query: 547 GXGKP 561
KP
Sbjct: 1141 PVPKP 1145
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +1
Query: 388 PDPXXXPXPPAXPKPXXAPXSXPPPWXXXXXGXSPXPXSTXFPVXLP 528
P P PP K P S PPP SP P + P +P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP-PSAPSLPSAVP 195
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 319 LRSLISNLSNTCDLTPLPEWSCEQSAW 239
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 394 PXXXPXPPAXPKPXXAPXSXP 456
P P PPA P P AP P
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAP 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,400
Number of Sequences: 5004
Number of extensions: 18743
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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