Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G21
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   133   3e-32
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   133   3e-32
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    29   0.90 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    28   1.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.4  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  133 bits (321), Expect = 3e-32
 Identities = 66/105 (62%), Positives = 76/105 (72%)
 Frame = -2

Query: 593 GTQRSYPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 414
           GT+R  PRKTH+ LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 413 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 279
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   G
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -3

Query: 292 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 113
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 112 D 110
           D
Sbjct: 386 D 386



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = -1

Query: 723 DKVKWARDIW-RTLSLSILCLPQDEMXDCIGVTQGKGYKGVTSRWHTKKLP 574
           DKV+WAR+ + +T+ +      Q+EM D IGVT+GKG +G T+RW TK+LP
Sbjct: 190 DKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARWGTKRLP 239


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  133 bits (321), Expect = 3e-32
 Identities = 66/105 (62%), Positives = 76/105 (72%)
 Frame = -2

Query: 593 GTQRSYPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 414
           GT+R  PRKTH+ LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 413 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHG 279
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   G
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -3

Query: 292 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 113
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 112 D 110
           D
Sbjct: 386 D 386



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = -1

Query: 723 DKVKWARDIW-RTLSLSILCLPQDEMXDCIGVTQGKGYKGVTSRWHTKKLP 574
           DKV+WAR+ + +T+ +      Q+EM D IGVT+GKG +G T+RW TK+LP
Sbjct: 190 DKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARWGTKRLP 239


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 645 DCIGVTQGKGYKGVTSRW 592
           D  G+T+GKG+ GV  RW
Sbjct: 152 DVKGITKGKGFAGVMKRW 169


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 402 NFAILFVDSLSNTIDFLVHFSTVMITFLTGTSY 500
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 598 RSDTFVSFALGDTNAVXHFILGQTQNRQG*GSPNVSGPF 714
           R+  F+S     + A  H  LGQ Q R G  SP+   PF
Sbjct: 49  RNPRFMSDEKLSSEASSHSTLGQQQARDGRQSPSKEAPF 87


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 131 HGYTQEGSYSRRSCGYHNPS 72
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 354 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 482
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 369 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 488
           ++ L RC++   F +LF  S S +  FL   S + I + +
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFS 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,271
Number of Sequences: 5004
Number of extensions: 67358
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)