Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_G20
(1213 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.14
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.24
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.74
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.14
Identities = 20/69 (28%), Positives = 23/69 (33%)
Frame = +1
Query: 154 PTIDXPPXXGXXAXPTXXSXNPGRXAPPXPXXGGAXXXXLPXGXGPXXPXPXTLXP*PPX 333
P++ PP P P APP P GA P P P P + P P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPK--PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 334 PLXXXXPPP 360
P P P
Sbjct: 1184 PAAGVPPVP 1192
Score = 30.7 bits (66), Expect = 0.43
Identities = 26/98 (26%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Frame = +1
Query: 76 PLSXPG-APXXPGXTHXXRXXXXLXGAPTIDXPPXXGXXAXPTXXSXNPGRXAPPXPXXG 252
P+ P AP P T GAP+ P P+ + + APP P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS---GAPPVPAPS 1089
Query: 253 GAXXXXLPXGXGPXXPXPXTLXP*PPXPLXXXXPPPQK 366
G P P P P PP P PP K
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAV--PPVPAPSGAPPVPK 1125
Score = 30.3 bits (65), Expect = 0.56
Identities = 20/69 (28%), Positives = 22/69 (31%)
Frame = +1
Query: 154 PTIDXPPXXGXXAXPTXXSXNPGRXAPPXPXXGGAXXXXLPXGXGPXXPXPXTLXP*PPX 333
P++ PP P P APP P GA P P P P PP
Sbjct: 1107 PSVAVPPVPAPSGAPPVPK--PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA---PPV 1161
Query: 334 PLXXXXPPP 360
P PP
Sbjct: 1162 PKPSVAAPP 1170
Score = 29.5 bits (63), Expect = 0.98
Identities = 26/98 (26%), Positives = 29/98 (29%)
Frame = +1
Query: 73 LPLSXPGAPXXPGXTHXXRXXXXLXGAPTIDXPPXXGXXAXPTXXSXNPGRXAPPXPXXG 252
+P S GAP P AP+ PP P P APP P
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPS-GAPPVPAPSGIPPVPK--PSVAAPPVPKPS 1108
Query: 253 GAXXXXLPXGXGPXXPXPXTLXP*PPXPLXXXXPPPQK 366
A P P P PP P+ PP K
Sbjct: 1109 VAVPPVPAPSGAPPVPKPSVAA--PPVPVPSGAPPVPK 1144
Score = 28.7 bits (61), Expect = 1.7
Identities = 28/109 (25%), Positives = 33/109 (30%), Gaps = 1/109 (0%)
Frame = +1
Query: 58 PLVXXLPLSXP-GAPXXPGXTHXXRXXXXLXGAPTIDXPPXXGXXAXPTXXSXNPGRXAP 234
P V P+ P GAP P + GAP + P A P + + G P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV----AAPPVPAPSSG--IP 1179
Query: 235 PXPXXGGAXXXXLPXGXGPXXPXPXTLXP*PPXPLXXXXPPPQKIXLGP 381
P P P P P P P P P P L P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.24
Identities = 25/91 (27%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Frame = +2
Query: 668 PPPLK----IXXPKGAPXTTPXXSPXXXXPXIGGFSXXTXPPXXSPPXAXXPXXXXIXXX 835
PPPL + P P P S P +G S + PP +PP +
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPP-LGNASRTSTPPVPTPPSLPPSAPPSLP-- 432
Query: 836 XXRPSXXPRCRPGAPYXXPTXXPXGXXPPXP 928
PS P GAP P PP P
Sbjct: 433 ---PSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 31.1 bits (67), Expect = 0.32
Identities = 25/101 (24%), Positives = 29/101 (28%)
Frame = +1
Query: 58 PLVXXLPLSXPGAPXXPGXTHXXRXXXXLXGAPTIDXPPXXGXXAXPTXXSXNPGRXAPP 237
PL +S P AP L A PP + P + APP
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Query: 238 XPXXGGAXXXXLPXGXGPXXPXPXTLXP*PPXPLXXXXPPP 360
G LP P P + PP P PPP
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.74
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 289 PXXPXPXTLXP*PPXPLXXXXPPPQKIXLGPXFXFSPPNXXXLSPXP 429
P P P + P P P PPP I GP PP P P
Sbjct: 732 PPPPPPAVIVP-TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -2
Query: 453 GEKNXXGXGGGG*XXXVGGRKXKXGPQXNFLGGGXXGXXGXRG 325
G + G GG GGR G + GGG G G RG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRG 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,919
Number of Sequences: 5004
Number of extensions: 26779
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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