Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G19
         (726 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...    42   0.012
UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing...    34   4.1  
UniRef50_UPI0000499027 Cluster: hypothetical protein 189.t00012;...    33   9.5  
UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus elo...    33   9.5  
UniRef50_Q5D5G3 Cluster: Phage tail sheath protein; n=1; Wolbach...    33   9.5  

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score = 42.3 bits (95), Expect = 0.012
 Identities = 28/60 (46%), Positives = 31/60 (51%)
 Frame = -3

Query: 697 INXIIKSPXFXTPNQPQX*XPXPINPXXAXXRRSSRRGLKPPVVIRGSIRVSHPXVXGHG 518
           IN IIKSP   T N P+       +          R G+K  VVIRGSI VSHP V GHG
Sbjct: 181 INPIIKSPIPYT-NHPRL--NIHFHQSADAVLEGVRAGVKASVVIRGSISVSHPLVTGHG 237


>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
           protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
           domain-containing protein 13B. - Takifugu rubripes
          Length = 634

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -2

Query: 269 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 156
           PSC F  PP  TVL    R  L++++  LL  +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543


>UniRef50_UPI0000499027 Cluster: hypothetical protein 189.t00012;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 189.t00012 - Entamoeba histolytica HM-1:IMSS
          Length = 713

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = -2

Query: 452 VIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALK 309
           +I RIL S P  + L ED+    N+++++ +++   +N+ T+  LALK
Sbjct: 117 IIMRILNSMPDNYTLTEDIYKKINKSLVE-RLQDTQSNVRTYAVLALK 163


>UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus
           elongatus|Rep: Tll0286 protein - Synechococcus elongatus
           (Thermosynechococcus elongatus)
          Length = 158

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -2

Query: 461 LLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIGTRV 282
           LL+VIP  L   P +H +I  +  A NQ ++  +  + DN   T + +       +  R+
Sbjct: 11  LLLVIPLWLAVSPRSHAMIRTIEEAPNQVVVQSRHPLRDNRGFTWQVILFSRPDQLQLRL 70

Query: 281 YVFDPSCYFSTP 246
             F    +F  P
Sbjct: 71  VGFPEQYHFRHP 82


>UniRef50_Q5D5G3 Cluster: Phage tail sheath protein; n=1; Wolbachia
           endosymbiont of Drosophila mojavensis|Rep: Phage tail
           sheath protein - Wolbachia endosymbiont of Drosophila
           mojavensis
          Length = 296

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = -2

Query: 464 ALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVK----IADNNLVTHKELALKVSSI 297
           +++ V+PRIL +P  TH L ED       A++    K    I  +   T+ E A+K    
Sbjct: 102 SIVHVLPRILIAPQFTHQLPEDGKNPAVAALVPIAEKLRSIIVADGPNTNDEEAIKWRKS 161

Query: 296 IG-TRVYVFDP 267
           +G +RVYV DP
Sbjct: 162 VGSSRVYVVDP 172


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,137,765
Number of Sequences: 1657284
Number of extensions: 10186416
Number of successful extensions: 25523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25513
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)