Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G16
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    58   1e-09
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    55   1e-08
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    29   0.53 
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    28   1.2  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = -3

Query: 465 LMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 361
           L+W+LLAREVLR+RG L R   WDV+ DL+FYRDP
Sbjct: 175 LIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = -3

Query: 465 LMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 361
           L W+LLAREVLRLRG + R   W+V+ DL+FYRDP
Sbjct: 176 LAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 395 MLWLICSSTVTPEESEKDEQQAKEQALVPAKPEVVAPVHE 276
           MLW I +   +PEE +KDE + K   +  A   VV+P++E
Sbjct: 1   MLWRILTCCKSPEE-DKDEHKKKPPNVGHAHLSVVSPLNE 39


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 368 VTPEESEKDEQQAKEQALVPAKPEVVAPVHED 273
           V P+E  +D ++A+E AL   +P+    +HED
Sbjct: 42  VIPDEELEDVERAEEMALSHLEPQNAVVLHED 73


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 425 VVCFPVTSAGMLWLICSSTVTPEESEKD 342
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,894
Number of Sequences: 5004
Number of extensions: 35971
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)