Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G16
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    45   7e-05
Z30662-8|CAA83136.2|  278|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   2.6  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   8.0  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   8.0  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 5/40 (12%)
 Frame = -3

Query: 465 LMWWLLAREVLRLRGVLPRDQRW-----DVVVDLFFYRDP 361
           LMWW+LARE+L LRG + R   +     +++ DL+FYRDP
Sbjct: 173 LMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDP 212


>Z30662-8|CAA83136.2|  278|Caenorhabditis elegans Hypothetical
           protein T16H12.3a protein.
          Length = 278

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 371 TVTPEESEKDEQQAKEQALVPAKPEVVAPVHEDWNETLEPV 249
           +V PE S K E +A+   L   KPE+     ED+ E +EPV
Sbjct: 218 SVKPEASLKREPKAETPTLTRVKPEIRNDSDEDFCEIIEPV 258


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 380 CSSTVTPEESEKDEQQAKEQALVPAKPEVVAPVHED 273
           CSST T E SEK ++Q    A+VP  P+ ++ + ED
Sbjct: 791 CSSTGTQETSEK-KRQENVLAVVPYNPKNISTLVED 825


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 219 CCTRCSSCFWSTPCSRRMVCP 157
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 170  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 265
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 170  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 265
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,773,378
Number of Sequences: 27780
Number of extensions: 217933
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)