Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_G15
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.42
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 31 1.3
12_02_1120 - 26228618-26229403 30 1.7
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 30 1.7
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 29 3.9
05_07_0210 + 28427167-28427589 28 6.8
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 28 6.8
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 28 9.0
08_02_0707 - 20212190-20214592 28 9.0
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 9.0
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 9.0
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 28 9.0
01_01_1137 + 9017211-9018584 28 9.0
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 447 TEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 569
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +3
Query: 387 SHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHRR 542
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/73 (30%), Positives = 28/73 (38%)
Frame = +3
Query: 123 ATAQSPTRRRTLAQVQPERGGSNIGSSCWRRDLVVWRTRRPASVPSR*SARFSRTGWAAT 302
A+A S T Q Q GG WR W R P A + G AA
Sbjct: 388 ASASSSTATAPSKQSQKGGGGGGGRGGSWRGQKSGWEARFLFKEPE---AAAAAAGDAAA 444
Query: 303 AEVSPPATCADSQ 341
+E PA+C D++
Sbjct: 445 SETHEPASCKDTR 457
>12_02_1120 - 26228618-26229403
Length = 261
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 319 GGETSAVAAHPVRENRADHLDGTEAGRRVRQTTRSRLQHELPILEPP 179
GGE AA P R + + T R R+ +RS H ++ PP
Sbjct: 140 GGEVVQAAARPTRLTASSEAERTTTMARRRRRSRSHSSHHALMMTPP 186
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +1
Query: 283 GLGGPQPRKSHLRLPVQTHKTFYHYANFLPQQILPATTQTTILRVPPLLHDVTPTLRNPT 462
GL P K H+ F +FLP +I L+VPP LH V P P
Sbjct: 57 GLLSFDPEKRLTAAEAMEHRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPP 116
Query: 463 AN 468
A+
Sbjct: 117 AS 118
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 568 RPV-RSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRLGSSV 446
RP R A R C GSAG R R SA V+ + RL + V
Sbjct: 32 RPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRLDAEV 73
>05_07_0210 + 28427167-28427589
Length = 140
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Frame = +3
Query: 126 TAQSPTRRRTLAQVQPERGGSNIGSSCW--RRDLVVWRTRR-----PASVPSR*SAR--F 278
TA P +A+ + G + W RR WR P ++P R SAR F
Sbjct: 44 TAGGPGEGAVMARAPEATAAAAAGPARWSDRRQCPPWRANSLENIVPENLP-RPSARRRF 102
Query: 279 SRTGWAATAEVSPPATCADSQDILP 353
+ AA AE +PP A +LP
Sbjct: 103 NSITAAAAAESAPPPASASPDAVLP 127
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 248 LRTVEVICPVLADWVGRNRGSLTSGYLCRLTRHFTTMQTSYRNKSYQPPRKLQFYGF 418
LR E I +A ++ R +GS S Y+ +F SY SY L Y F
Sbjct: 281 LRAPEDIAFAVALFIARKKGSFVSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEYDF 337
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 217 SRLQHELPILEPPRSGCTCARVRRLVGDCAVAGPTRDVNVCF 92
S LQH LPI+ P RS +C+ R + G + C+
Sbjct: 220 SLLQHFLPIMNPVRSESSCSSSRVIAISACFTGMSLICRGCY 261
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 387 SHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIARH 554
SHH +++ S + S TE +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 598 SEVVVTCKIGRPVRS--CLAMRRC 533
S++ +TCKI RPVRS C RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 435 CYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHR 539
C + T+EP+R+ + T L + H P E E R
Sbjct: 5 CEAGTDEPSRDDVKGTGNGILENGHSHKPEEEEWR 39
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 598 SEVVVTCKIGRPVRS--CLAMRRC 533
S++ +TCKI RPVRS C RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386
>01_01_1137 + 9017211-9018584
Length = 457
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 370 VRSLHSGKMSCESAQVAGGETSAVAAHPVREN 275
++ L SG + + +VAGG V AHP+ E+
Sbjct: 264 IKRLQSGIRARAAGKVAGGRVVRVEAHPIPEH 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,896
Number of Sequences: 37544
Number of extensions: 495272
Number of successful extensions: 1626
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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