Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_G14
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 97 2e-20
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 92 5e-19
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073... 31 0.71
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 31 0.94
11_03_0108 + 10101717-10101724,10101927-10101962,10102242-101023... 29 2.9
12_02_0382 - 18392481-18392525,18392926-18393018,18393149-183932... 29 3.8
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 3.8
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 96.7 bits (230), Expect = 2e-20
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 1/162 (0%)
Frame = -2
Query: 641 YREGFTVXAGPLRXYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEE-CPRHV 465
+ GFTV GPLR + DP NA FL I+ E PSEL +V++ R EE CP V
Sbjct: 266 WTNGFTVNDGPLRSFDDPANASFLKSIKNSECPSELEPADKKSQVNVNLVRKEEKCPEPV 325
Query: 464 VKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQPVTTLQFRL 285
+ F G LG+P+ + +T+D++ P T+LQ R
Sbjct: 326 KRAAPFHGAAKTLGTPSDNNSTPPEATSAAAAASSTETASKTVTITVDDSLPSTSLQIRF 385
Query: 284 ADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 159
DG+R+ FN SHT+ +R F+ P + ++L FP
Sbjct: 386 VDGSRMVAHFNTSHTIADVRAFIDTTRPG-EAGDYTLQAGFP 426
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 91.9 bits (218), Expect = 5e-19
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Frame = -2
Query: 641 YREGFTVXAGPLRXYSDPENAEFLSCIRRGEIPSEL--SGQGVSVRVSLEDSRHEECPRH 468
+ GFTV GPLR Y DP NA+F+ I++ + P EL + + V V++ R E+
Sbjct: 163 WNNGFTVDDGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVI-KRLEDYQAP 221
Query: 467 VVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQPVTTLQFR 288
+ P F G G LG + + +D++ P T++Q R
Sbjct: 222 LRPPSPFQGVGRTLGGGSSAEESQAPAPATQEPRRSVG-------IVVDDSLPFTSIQLR 274
Query: 287 LADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 159
LADGTR+ RFN HTVG +R F+ + P RP+ L T FP
Sbjct: 275 LADGTRMVARFNMHHTVGDIRSFIDASRPG-ATRPYQLQTGFP 316
>03_06_0557 +
34704990-34705400,34706271-34706485,34707142-34707367,
34707447-34707532,34708030-34708121,34708232-34708471,
34709455-34709750
Length = 521
Score = 31.5 bits (68), Expect = 0.71
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 86 PLHDRRVEQVRLR---QGSRRRHPAPRSGRPSAD*MAAAGTPAPLATRTPSA 232
P H RR +Q RLR S P+PRSGR A AAA PA +A A
Sbjct: 23 PPHSRRQQQQRLRSPTSPSLSPSPSPRSGRHKA---AAAAPPAVVAAAAVGA 71
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 92 HDRRVEQVRLRQGSRRRHPAPR-SGRPSAD*MAAAGTPAPLATRT 223
+D+R+E+ R R+ R R P+P S PS A+A TP T T
Sbjct: 511 YDKRMERERERERKRVRAPSPSPSPSPSPSPSASATTPTQTGTST 555
>11_03_0108 +
10101717-10101724,10101927-10101962,10102242-10102392,
10102393-10102551
Length = 117
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 15 FNKSKSILYKTVLIQQNYWCRY---LSRCM-TVELSRFACARXRGVVTQLRA 158
FNKS SI Y V+ + +W R+ L RC E + A + +V QL A
Sbjct: 55 FNKSPSISYMQVIFRATHWLRFWAQLQRCEDDREFLKVAYRKLESMVMQLFA 106
>12_02_0382 -
18392481-18392525,18392926-18393018,18393149-18393213,
18393363-18393425,18393609-18393705,18395906-18395983,
18396012-18396110
Length = 179
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = +3
Query: 21 KSKSILYKTVLIQQNYWC-RYLSRCMTVELSRFACARXRGVVTQLRAREGRQQTEWPQLV 197
K K I+Y T L YW RY+ VELS A V + TE L
Sbjct: 57 KEKKIIYLTSLNPYGYWMQRYMQNYDEVELSALGMAIGTVVTVAEILKNNGLATEKKILT 116
Query: 198 RRLRSRHELPQRADRVAVVE 257
+ ++ E R R A +E
Sbjct: 117 STIGTKDESKGRLVRKAKIE 136
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 137 RRHPAPRSGRPSAD*MAAAGTPA 205
RRHP+P +GR SA AAG+ A
Sbjct: 51 RRHPSPNAGRSSAAAAEAAGSQA 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,598,910
Number of Sequences: 37544
Number of extensions: 256363
Number of successful extensions: 994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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