Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G13
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    77   3e-15
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    77   3e-15
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   2.0  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   4.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = -3

Query: 299 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 153
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPA 374



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = -1

Query: 379 DLFGKSITPMGVFPHYGEVNNDFVMIKVA 293
           D   K ITPMG F  YG V NDFVM+  A
Sbjct: 299 DATEKRITPMGGFVRYGVVENDFVMLNGA 327


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = -3

Query: 299 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 153
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPA 374



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = -1

Query: 379 DLFGKSITPMGVFPHYGEVNNDFVMIKVA 293
           D   K ITPMG F  YG V NDFVM+  A
Sbjct: 299 DATEKRITPMGGFVRYGVVENDFVMLNGA 327


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 161 TPAXQGCIHGYTQEGSYSRRSCGYHNPS 78
           T   +   HGY+   +  R+ C YHNPS
Sbjct: 299 TSLFRASFHGYSMY-ALERKMCNYHNPS 325


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 SKSNDTLFRSHAATLIITKSLFTS 329
           SKS D + RSH+  L+  ++L TS
Sbjct: 292 SKSTDNIIRSHSPVLLTPQTLSTS 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,849
Number of Sequences: 5004
Number of extensions: 31514
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)