Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G11
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.78 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 33/128 (25%), Positives = 35/128 (27%), Gaps = 13/128 (10%)
 Frame = +3

Query: 363  PXPXXPXA-PGPX-AXXLLXXPT---PXXRXPXXPXXXPXRXSPXXXXXXXXPRPXLXXX 527
            P P  P + P P     +L  PT   P    P  P   P   SP        P P L   
Sbjct: 961  PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSK 1020

Query: 528  XXRXXX----APPXXXPGXXXPXXPPXXXPXSPPRXXX----PXXTXXPXSXXXPXPXXX 683
                      APP   P    P   P   P  P         P     P S     P   
Sbjct: 1021 APPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080

Query: 684  PXPPXPXP 707
              PP P P
Sbjct: 1081 GAPPVPAP 1088



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
 Frame = +3

Query: 549  PPXXXPGXXXPXXPPXXXPXSPPRXXXPXXTXXPXSXXXPXPXXXP-XPPXPXP 707
            PP   P    P  PP       P+         P S   P P      PP P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/55 (29%), Positives = 17/55 (30%)
 Frame = +3

Query: 546 APPXXXPGXXXPXXPPXXXPXSPPRXXXPXXTXXPXSXXXPXPXXXPXPPXPXPP 710
           +PP   P    P   P   P  PP    P     P     P       PP P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPP---APIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 27/111 (24%), Positives = 29/111 (26%)
 Frame = +3

Query: 369 PXXPXAPGPXAXXLLXXPTPXXRXPXXPXXXPXRXSPXXXXXXXXPRPXLXXXXXRXXXA 548
           P  P  P   A   +  P      P  P   P R +P        P P           A
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP---PPRSAPSTGRQ---PPPLSSSRAVSNPPA 390

Query: 549 PPXXXPGXXXPXXPPXXXPXSPPRXXXPXXTXXPXSXXXPXPXXXPXPPXP 701
           PP   PG   P  PP            P     P S     P   P P  P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP-PSLP 440



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
 Frame = +3

Query: 549 PPXXXPGXXXPXXPPXXXPXSPPR--XXXPXXTXXPXS--XXXPXPXXXPXPPXPXPP 710
           PP   P    P  PP   P +PP      P     P S     P P   P  P P PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP-PLPP 471



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/58 (24%), Positives = 16/58 (27%)
 Frame = +3

Query: 549 PPXXXPGXXXPXXPPXXXPXSPPRXXXPXXTXXPXSXXXPXPXXXPXPPXPXPPXXXR 722
           PP   P    P  PP   P +      P     P +     P        P PP   R
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSR 298



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
 Frame = +3

Query: 546 APPXXXPGXXXPXXPPXXXPXSPPRXXX-PXXTXXPXSXXXPXPXXXPXPPXP 701
           APP    G       P   P +PP     P     P +   P P   P P  P
Sbjct: 435 APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 321 LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,420
Number of Sequences: 5004
Number of extensions: 12421
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)