Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G10
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269     31   1.4  
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89...    29   5.8  
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856...    25   7.2  
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94...    28   7.7  

>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
          Length = 309

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 42  WAPRRDTLERPRPAARAHGA 101
           WA RR    RPRPA RA GA
Sbjct: 102 WAERRAASRRPRPAPRAEGA 121


>11_01_0115 -
           889159-889921,889962-890053,890141-890359,890738-891835
          Length = 723

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 110 GGRRAAPA*SCGHSRSEMSASRRRLSG 190
           GGRR A + + G  R+ +S S RRLSG
Sbjct: 278 GGRRGAASPAPGGRRASLSPSSRRLSG 304


>03_03_0038 +
           13984525-13984917,13985351-13985429,13985535-13985628,
           13985712-13985844
          Length = 232

 Score = 25.0 bits (52), Expect(2) = 7.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 623 PPPPXXFFFXXGEXKKKKK 679
           PPPP       GE KKKKK
Sbjct: 38  PPPPPPPQLRGGETKKKKK 56



 Score = 21.8 bits (44), Expect(2) = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 659 EXKKKKKXXPXPPP 700
           E +++KK  P PPP
Sbjct: 73  EVERRKKPPPPPPP 86


>12_01_0125 -
           946480-947242,947283-947374,947462-947680,948059-949156
          Length = 723

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 110 GGRRAAPA*SCGHSRSEMSASRRRLSG 190
           GGRR A + + G  R+ +S S RRLSG
Sbjct: 278 GGRRGAGSPAPGGRRASLSPSSRRLSG 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,413
Number of Sequences: 37544
Number of extensions: 274194
Number of successful extensions: 688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)