Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G07
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   1.3  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   1.3  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   1.3  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     29   5.1  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    29   5.1  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    29   5.1  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/77 (27%), Positives = 22/77 (28%)
 Frame = +3

Query: 420 PPPXXPXXGXXPXXRXIXPXPQXHLXSPPXXLXPXXXXXPXPPXXPXXXXXIXARHXAPX 599
           PPP  P  G  P      P P     SPP    P     P PP               P 
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPPTGSPPPPPAGGSPPPPR 293

Query: 600 AAXPPXXXXXXXSXXSG 650
           A  PP       S  +G
Sbjct: 294 AGSPPPPPPPRGSPPTG 310


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/77 (27%), Positives = 22/77 (28%)
 Frame = +3

Query: 420 PPPXXPXXGXXPXXRXIXPXPQXHLXSPPXXLXPXXXXXPXPPXXPXXXXXIXARHXAPX 599
           PPP  P  G  P      P P     SPP    P     P PP               P 
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPPTGSPPPPPAGGSPPPPR 314

Query: 600 AAXPPXXXXXXXSXXSG 650
           A  PP       S  +G
Sbjct: 315 AGSPPPPPPPRGSPPTG 331


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/77 (27%), Positives = 22/77 (28%)
 Frame = +3

Query: 420 PPPXXPXXGXXPXXRXIXPXPQXHLXSPPXXLXPXXXXXPXPPXXPXXXXXIXARHXAPX 599
           PPP  P  G  P      P P     SPP    P     P PP               P 
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPP---PPRTGSPPPPPTGSPPPPPAGGSPPPPR 299

Query: 600 AAXPPXXXXXXXSXXSG 650
           A  PP       S  +G
Sbjct: 300 AGSPPPPPPPRGSPPTG 316


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 711 GXSGGGXXWGGXRGXGXXGEXRXXG 637
           G +GGG  WGG  G G  G  R  G
Sbjct: 73  GNNGGGGNWGGNGGGGNGGGGRGGG 97



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 726 GXXXXGXSGGGXXWGGXRGXG 664
           G    G  GGG  WGG RG G
Sbjct: 51  GGPGWGRGGGGSGWGGGRGGG 71


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
 Frame = +3

Query: 420 PPPXXPXXGXXPXXRXIXPXP-------QXHLXSPPXXLXPXXXXXPXPPXXPXXXXXIX 578
           PPP  P     P      P P         H   PP  L P     P PP  P     + 
Sbjct: 201 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPPAQLM 260

Query: 579 ARHXAPXAA 605
           A    P  A
Sbjct: 261 ASSGTPSLA 269


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
 Frame = +3

Query: 420 PPPXXPXXGXXPXXRXIXPXP-------QXHLXSPPXXLXPXXXXXPXPPXXPXXXXXIX 578
           PPP  P     P      P P         H   PP  L P     P PP  P     + 
Sbjct: 187 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPPAQLM 246

Query: 579 ARHXAPXAA 605
           A    P  A
Sbjct: 247 ASSGTPSLA 255


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
 Frame = +3

Query: 420 PPPXXPXXGXXPXXRXIXPXP-------QXHLXSPPXXLXPXXXXXPXPPXXPXXXXXIX 578
           PPP  P     P      P P         H   PP  L P     P PP  P     + 
Sbjct: 187 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPPAQLM 246

Query: 579 ARHXAPXAA 605
           A    P  A
Sbjct: 247 ASSGTPSLA 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,703,961
Number of Sequences: 27780
Number of extensions: 120317
Number of successful extensions: 605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)