Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G06
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   5.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 637 SPHRXRHNGSPSGXRHQQFPSQASILPISGKFQ 539
           +P +    G P G    Q PSQ  I P SG  Q
Sbjct: 41  NPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQ 73



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -1

Query: 354 GSPSGNRHQQFPSQASTLPISGKFQAHDINNQ 259
           G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 423 RSQGQADFVGCLCHELGIYLIWVK 494
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 171 NNGSPSGNRHQQFPSQASTLP 109
           N+ SP+G+  Q   S AST P
Sbjct: 60  NSPSPTGSSPQHSGSSASTSP 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,061
Number of Sequences: 438
Number of extensions: 3798
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)