Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G04
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   112   5e-26
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   112   6e-26
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.7  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    27   3.0  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.0  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   9.2  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  112 bits (270), Expect = 5e-26
 Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
 Frame = -1

Query: 488 KDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSK 309
           +D G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD +FGS    ++
Sbjct: 213 EDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQ 272

Query: 308 QKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 162
            KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 273 LKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323



 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 25/42 (59%), Positives = 37/42 (88%)
 Frame = -3

Query: 603 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNQGSG 478
           KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+ +G
Sbjct: 175 KAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAG 216



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = -2

Query: 772 QRGXALAAPVXVPGSQRXFQVRGHIIEKIPEFPLVVADKVQEINKTKQAVXFLRRLQ 602
           ++  A+++ V   G       RGH IE+IPE PLVV D VQ   KTK+AV  L+ ++
Sbjct: 119 EKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIK 175


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  112 bits (269), Expect = 6e-26
 Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
 Frame = -1

Query: 488 KDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSK 309
           +D G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD +FGS    ++
Sbjct: 213 EDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQ 272

Query: 308 QKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 162
            KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N
Sbjct: 273 LKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 25/42 (59%), Positives = 37/42 (88%)
 Frame = -3

Query: 603 KAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNQGSG 478
           KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+ +G
Sbjct: 175 KAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTG 216



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 25/57 (43%), Positives = 34/57 (59%)
 Frame = -2

Query: 772 QRGXALAAPVXVPGSQRXFQVRGHIIEKIPEFPLVVADKVQEINKTKQAVXFLRRLQ 602
           ++  A+A+ V   G       RGH IE+IPE PLVV D VQ   KTK+AV  L+ ++
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIK 175


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 388 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 254
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 661 DKVQEINKTKQAVXFLRRLQG 599
           DK+ +I KT Q+V FL+  QG
Sbjct: 55  DKIPDIRKTLQSVQFLKERQG 75


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 382 VSSSGLSPHSAGLTPYSGHGRHHRNK 305
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -1

Query: 350 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 171
           RL+    +W     ++    +PQ K  +    + LK DEIR+        V+  + +LN 
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELNK 318

Query: 170 LTNXQ 156
           + + +
Sbjct: 319 VRSFE 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,506
Number of Sequences: 5004
Number of extensions: 54214
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)