Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_G04
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 120 1e-27
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 117 9e-27
08_02_1278 - 25838146-25839411 32 0.44
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.0
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 30 2.4
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.4
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 29 3.1
02_04_0073 - 19471254-19472681 29 4.1
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 5.5
11_05_0052 + 18683077-18683385 28 9.6
03_03_0125 - 14630078-14630136,14630197-14631160 28 9.6
03_03_0122 - 14617879-14618871 28 9.6
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 9.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 120 bits (290), Expect = 1e-27
Identities = 58/135 (42%), Positives = 85/135 (62%)
Frame = -1
Query: 491 TKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 312
T+ + +AFRN+PGV+ LAPGGHLGRFVIWT+SAF +L+ ++G+++ PS
Sbjct: 217 TEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPS 276
Query: 311 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSL 132
+KK F LP+PKMAN DL R++ SDE++ V++ NK V R ++ NPL N +
Sbjct: 277 LKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPY 336
Query: 131 RGRAEEESYLRAAQK 87
G A + + L A +
Sbjct: 337 FGTARKMATLAEAAR 351
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = -3
Query: 600 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF-NQGS 481
A++D K S +R GKGKMRNRR I RKGPLI++ +GS
Sbjct: 180 AYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGS 220
Score = 44.8 bits (101), Expect = 8e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = -2
Query: 769 RGXALAAPVXVPGSQRXFQVRGHIIEKIPEFPLVVADKVQEINKTKQAVXFLRRL 605
R A+A+ + RGH IE +PE PLV++D + I KT QA+ L+++
Sbjct: 124 RRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQV 178
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 117 bits (282), Expect = 9e-27
Identities = 58/135 (42%), Positives = 82/135 (60%)
Frame = -1
Query: 491 TKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 312
T+ + +AFRN+PGV+ LAPGGHLGRFVIWT+ AF +LD ++G + TP+
Sbjct: 216 TEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPA 275
Query: 311 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSL 132
+KK F LP+PKMAN DL+RL+ SDE++ V++ NK V + NPL N +
Sbjct: 276 LKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPY 335
Query: 131 RGRAEEESYLRAAQK 87
G A + + L A +
Sbjct: 336 FGTARKMAALAEAAR 350
Score = 48.8 bits (111), Expect = 5e-06
Identities = 24/41 (58%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = -3
Query: 600 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIF-NQGS 481
A++D K S +RAGKGKMRNRR I RKGPLI++ +GS
Sbjct: 179 AYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGS 219
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = -2
Query: 775 RQRGXALAAPVXVPGSQRXFQVRGHIIEKIPEFPLVVADKVQEINKTKQAVXFLRRL 605
R R A+A+ + RGH IE +PEFPLVV+D ++ I KT Q++ L+++
Sbjct: 121 RLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQI 177
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 599 ALKAPQEXDSLFGLVDLLDFVGYNQGKLGNLFNNVSSNL 715
A A +E LF L+D+LD V +G+L LF+ S+ L
Sbjct: 86 AAAAAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 418 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 245
+S S+LR + LD+SSS +P S+ H HH+ + S WP S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435
Query: 244 SLMRSGRSSVLPTNA 200
++ SG LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 478 P*SLVEDYEGPLTLDTTTVAHFTLTSTKTLRLVHLKDIRP--CLEGASG 618
P S V + + PLT+ T V H T + + +RL K++ P +GASG
Sbjct: 631 PSSTVVEPKKPLTVATDLVGHITKSFAQAVRLGEAKNVSPNSADKGASG 679
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1
Query: 404 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 264
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = -1
Query: 329 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGD 150
S ++PS + P P + L R + DE L+A ++ ++A ++ +
Sbjct: 367 SHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQADQEKELKALQEAELRRLEETA 426
Query: 149 AETQSLRGRAEEESYLRAAQ--KEELEGS 69
A +L + +EE R Q +EELE S
Sbjct: 427 AREAALEKQKQEEEERRKKQLEEEELESS 455
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 364 SPHSAGLTPYSGHGRHHRNKR 302
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 339 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 461
G+ A G++ DD+ K SR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>11_05_0052 + 18683077-18683385
Length = 102
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 552 GKGKMRNRRRIQRKGPLIIFNQGSGS-DSRLPQHPRC 445
G G ++ RRR P + +G GS D + HP C
Sbjct: 27 GGGGIQRRRRTGAADPTTVMRRGGGSGDGEVRAHPPC 63
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 386 GRFVIWTQSAFGRL-DPLFGSWK 321
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 386 GRFVIWTQSAFGRL-DPLFGSWK 321
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 354 ECGLSPDDETSKMTSRSQLQEVQ 422
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,069,738
Number of Sequences: 37544
Number of extensions: 421192
Number of successful extensions: 1120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -