Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_G04
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 101 8e-22
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 30 2.1
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 28 6.5
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 101 bits (241), Expect = 8e-22
Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Frame = -1
Query: 488 KDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSK 309
+D RAFRNIPGV+ LAPGGHLGR +IWT+SAF +LD ++G+ S
Sbjct: 212 QDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSS 271
Query: 308 Q-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPL 168
Q KK +++P P MAN+D +R+++S+E+ K +RAP K + NPL
Sbjct: 272 QLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPL 319
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -2
Query: 772 QRGXALAAPVXVPGSQRXFQVRGHIIEKIPEFPLVVADKVQEINKTKQAVXFLRR 608
Q+ A+++ + G Q RGH+I+++ E PLVV+DKV+ KTK+AV FLRR
Sbjct: 118 QKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRR 172
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = -3
Query: 597 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNQ 487
W+DI KVY S+R RAGKGK+RNR+ Q+ GP++I+ Q
Sbjct: 176 WADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQ 212
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -2
Query: 385 DVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV 215
+ ++S P+S TP S G+ HR S +PT+ SS+M S S
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591
Query: 214 LPTNA*SVLHAN 179
LP+ + S + N
Sbjct: 592 LPSTSFSNQYPN 603
>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
protein F10F2.2 protein.
Length = 1343
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -1
Query: 248 LKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGDAETQSLRGRAEEESYLRAAQKEELEGS 69
+ DE+RK AP+++V++ + + G A + S++G E + A Q+ + E
Sbjct: 425 IDKDEVRKEPCAPHQKVVKIGGPVYRIGVGGGAASSVSVQGNRENQLDFAAVQRGDAEMG 484
Query: 68 G 66
G
Sbjct: 485 G 485
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = -1
Query: 320 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGD 150
TP + + + P P+ ++D ++ + + R+V +V ++ P+ + +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226
Query: 149 AETQSLRGRAEEESYLRAAQKEELE 75
+G EE+ +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = -1
Query: 320 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGD 150
TP + + + P P+ ++D ++ + + R+V +V ++ P+ + +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226
Query: 149 AETQSLRGRAEEESYLRAAQKEELE 75
+G EE+ +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -1
Query: 386 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 207
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 206 KRVI 195
K +
Sbjct: 2849 KEFV 2852
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = -1
Query: 386 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 207
G F+ T G F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 206 KRVI 195
K +
Sbjct: 2849 KEFV 2852
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,565
Number of Sequences: 27780
Number of extensions: 319932
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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