Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G01
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    29   0.73 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.8  

>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 154 SLPSSEIYRQLVDPRHVSSDSFGVYVKSLIPYSSQFWVVSFIAL 23
           +L  S I+R  +   HVSS S GVY   ++ ++S  WV    AL
Sbjct: 2   TLLDSSIFRFRLSSLHVSSRSLGVYFAGIM-FASAVWVFVDAAL 44


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 130 RQLVDPRHVSSDSFGVYVKSLIPYSSQFWVVSFI 29
           R L++ R+ S+ S G+   S  P SSQF V SF+
Sbjct: 52  RTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPSFL 85


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 143 LRDLPPVGRSSPCFFRLLWSLRKIVNPLFF 54
           L++L  +G  SPC  RL   L  ++ P F+
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVPTFW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,645
Number of Sequences: 5004
Number of extensions: 17088
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)