Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_G01
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0160 - 20794974-20795977,20796241-20796295                       29   4.1  
10_08_0782 + 20517103-20519601                                         29   5.4  
12_01_0302 - 2286171-2286341,2286747-2286968                           28   9.4  

>11_06_0160 - 20794974-20795977,20796241-20796295
          Length = 352

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 43  PKTVKNKGLTILRRLQRSRKKHGEDLPTGGRSRR 144
           P+  + +G  +LRR + SR++HG  L  G  +R+
Sbjct: 159 PRRRRQEGGALLRRAESSRRQHGRALREGREARQ 192


>10_08_0782 + 20517103-20519601
          Length = 832

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -2

Query: 172 SASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKSLIP 62
           SAS  A  PS   Y+QL+D   +S D  G  V SLIP
Sbjct: 309 SASDAAISPSMRAYKQLID--RLSVDEHGDPVTSLIP 343


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 82  RLQRSRKKHGEDLPTGGRSRRKGEKLE 162
           RL+R RK +  D+   G  + +GEKLE
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLE 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,694
Number of Sequences: 37544
Number of extensions: 215984
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)