Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_F22
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.91 
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.91 
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   3.7  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   4.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   6.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.5  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   8.5  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    25   8.5  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
 Frame = +3

Query: 99  RSQPAPY-LGPGRSPVGAIETARQG*RRAHYIHPTVPRTPDRWPPAKRPPVPSFSGPRAR 275
           ++ P P  L P   P   +++          + P  P+ P   PP  + PV + S   + 
Sbjct: 163 KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP--PPLSQAPVANTSSRPSS 220

Query: 276 FDGAALHLPPERSGERGLPSPG-FLLRVSVQSTPPLVWV 389
           F   A H P   S     P+ G  +   SV   PP  +V
Sbjct: 221 FAPPAGHAPNVTSESPKFPNRGPSIPSASVPPVPPSSYV 259


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 286 PRYTFPQSGRGNAVYHHPAS-YCG 354
           P Y   +SG+G+ VY HP S  CG
Sbjct: 49  PYYFIEKSGKGSVVYFHPTSDLCG 72


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +3

Query: 300 PPERS----GERGLPSPGFLLRVSVQSTPPL 380
           PP+ S    G  G PSP   L VS  +TPPL
Sbjct: 234 PPKTSMPPFGSAGSPSPNRSLNVSNNTTPPL 264


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 197 GMDVMCSASTLSRRFNSPDWAPARSEVGRRL*AAGVF 87
           G+ V+ +++ L  RF  P+W P R+ +   +   G+F
Sbjct: 197 GIGVIVASTCLLDRFRQPEWRPYRALIFVLMGLFGIF 233


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 195  PTVPRTPDRWPPAKRPPVPSFSGPRARFDG 284
            P+VP +P + P A +  +P+F G    + G
Sbjct: 1578 PSVPTSPLKAPTASQLIIPNFDGSITNYSG 1607


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 180 AHYIHPTVPRTPDRWPPAKRPPVPSFSGPRARFDGAALHLP-PERSGER-GLPSPGFLLR 353
           +H+ +  +  +    PP    P   FS P +    ++LH   P+R  +  G  SPG LLR
Sbjct: 82  SHHANTEIDSSSSMLPPPSSDP---FSSPLS----SSLHRSSPKRPHDSLGEESPGKLLR 134

Query: 354 VSVQSTP 374
            SV+  P
Sbjct: 135 TSVKQEP 141


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 325 VYHHPASYCG*ACRARHPSSGSLPAQNG 408
           +YH  +SY   +C A +   G  PA+ G
Sbjct: 98  IYHGYSSYTASSCTAIYECEGDYPARTG 125


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/50 (40%), Positives = 22/50 (44%)
 Frame = +3

Query: 195 PTVPRTPDRWPPAKRPPVPSFSGPRARFDGAALHLPPERSGERGLPSPGF 344
           P V R   R  P  + PV   +GP  R  G     PP   G RG P PGF
Sbjct: 98  PGVARPAGRGIPLGQAPV-GLAGP-VRGVGYTAPPPPAGFG-RGAPPPGF 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,244
Number of Sequences: 5004
Number of extensions: 50690
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)