Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_F22
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    37   0.017
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.1  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
 Frame = +3

Query: 21  HRRKSPDPHPRGRWGMWELNLTKNSCRSQPAPYLGPGRSPVGAIETARQG*RRAHYIHPT 200
           H+ + P P     WG W  N      R  P P  GP   PV       QG  R +   P 
Sbjct: 51  HQPRHPGPPAHQDWGDWSAN-RDEQWRGPPGP-SGPSGPPV----YHNQGPPRGY--PPP 102

Query: 201 VPRTPDRWPPAKRPPVPSFSGPRA-RFDGAALHLPP 305
            P+  D W  A  P      GP    F G   H PP
Sbjct: 103 PPQGADTWRGAPPPAHHGHFGPPGHHFQGPPQHFPP 138


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
 Frame = +3

Query: 195 PTVPRTPDRWPPAKRPPVPSFSGPRARFDGAALHLPPERSGERGL----PSPGFLLRVSV 362
           P  P +   WPP   PP     GP     G     PP R G  G+    P P   +R   
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPG-MPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPG 345

Query: 363 QSTPPLVWVPPRTKRVGP 416
              PP    PPR    GP
Sbjct: 346 GMPPP---PPPRYPSAGP 360


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
 Frame = +3

Query: 195 PTVPRTPDRWPPAKRPPVPSFSGPRARFDGAALHLPPERSGERGL----PSPGFLLRVSV 362
           P  P +   WPP   PP     GP     G     PP R G  G+    P P   +R   
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPG-MPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPG 355

Query: 363 QSTPPLVWVPPRTKRVGP 416
              PP    PPR    GP
Sbjct: 356 GMPPP---PPPRYPSAGP 370


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
 Frame = +3

Query: 108 PAPYLGPGRSPVGAIETARQG*RRAHYIHPTVPRTP-DRWPPAKRPPVPSFSGPRARFDG 284
           P P     R+P  +  +A Q   R     P     P  R PPA R P  +   P A    
Sbjct: 275 PCPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPPATTRP 334

Query: 285 AALHLPPERSGE---RGLPSP 338
           A    PP R  E    G PSP
Sbjct: 335 APASQPPVREPETPDSGYPSP 355


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 195 PTVPRTPD-RWPPAKRPPVPSFSGPRARFDGAALHLPPERSGERGLPSP 338
           P VPRTP  R PP +RPP+   S P+ R        P  R+  R  PSP
Sbjct: 144 PRVPRTPPPRSPPPRRPPMTPPS-PQRR-PPRTPPSPEPRNPPRTPPSP 190


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 140 SRGY*NGETGLTQSTLHPSHRPTDAGPVAASETTT 244
           + G   G+T +  +T  P+HRPT AG    +  TT
Sbjct: 209 ANGITRGQTRVPGTTREPTHRPTTAGWTNGANGTT 243



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 146 GY*NGETGLTQSTLH-PSHRPTDAGPVAASETTT 244
           G+ NG  G T  T   P+HRPT AG    +  TT
Sbjct: 330 GWTNGANGTTIDTSRGPTHRPTTAGWTNGANGTT 363


>AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.1 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 198 TVPRTPDRW--PPAKRPPVPSFSGPRARFDGAALHLPPERSGERGLPSPGFLLRVSV 362
           T P TP  +  PP + PPVP  S P  R D     + P+R  ++  P P   +R++V
Sbjct: 115 TNPGTPRIYLPPPPRPPPVPPLSPPE-RPDIPHARVLPQR--QKPTPKPDKEIRITV 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,327,361
Number of Sequences: 27780
Number of extensions: 345748
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)