Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_F20
         (1067 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0016 - 19284810-19284926,19285527-19286879                       24   5.6  
02_02_0052 - 6389387-6389491,6389492-6389586,6390077-6390221           29   6.3  
06_01_1176 + 10112257-10113126                                         29   8.3  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    25   9.2  

>11_06_0016 - 19284810-19284926,19285527-19286879
          Length = 489

 Score = 23.8 bits (49), Expect(2) = 5.6
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = -3

Query: 240 PPPXXXXGGGXXXKXRXIXXXPPXPPPP 157
           PP     G G           PP PPPP
Sbjct: 67  PPASAAAGDGAAPDQEPPPSPPPPPPPP 94



 Score = 23.8 bits (49), Expect(2) = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 177 PPXPPPPXKKXXXGAXXXFFFF 112
           PP PPPP       +   F+F+
Sbjct: 91  PPPPPPPRPAPSLASALPFWFY 112


>02_02_0052 - 6389387-6389491,6389492-6389586,6390077-6390221
          Length = 114

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 177 PPXPPPPXKKXXXGAXXXFFFFF 109
           PP PPPP      G    FFFF+
Sbjct: 35  PPPPPPPTVLVDGGLRAEFFFFY 57



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 175 PXXPPPPKKXXXGGXXXFFFFFFS 104
           P  PPPP     GG    FFFF++
Sbjct: 35  PPPPPPPTVLVDGGLRAEFFFFYA 58


>06_01_1176 + 10112257-10113126
          Length = 289

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 102 GEKKKKKKXXXPPXXXFXGGGGXXGG 179
           G  +K K+   PP   F GGGG  GG
Sbjct: 77  GGCRKPKRPAPPPSSSFTGGGGGGGG 102


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 24.6 bits (51), Expect(2) = 9.2
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -3

Query: 240 PPPXXXXGGGXXXKXRXIXXXPPXPPPPXK 151
           PPP              +   PP PPPP K
Sbjct: 209 PPPLPASSEPVDPSAASLPPLPPPPPPPPK 238



 Score = 22.2 bits (45), Expect(2) = 9.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 177 PPXPPPPXKKXXXGA 133
           PP PPPP      GA
Sbjct: 231 PPPPPPPKPANIAGA 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,190
Number of Sequences: 37544
Number of extensions: 346679
Number of successful extensions: 2119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1708
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3176197312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)