Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_F16
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 36 0.034
08_01_0059 - 394001-394708 29 3.9
03_01_0515 - 3864796-3865425 28 6.9
07_03_0177 - 14770777-14772045 28 9.1
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.1
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/103 (25%), Positives = 28/103 (27%)
Frame = +2
Query: 395 PPRXXCXPXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXX 574
PP P P P P +P PPP PP PP P
Sbjct: 1195 PPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPV------KSPPPPAPVISPPPPEKSP 1248
Query: 575 XXPXPXLXLXXAAXGXPXXXXXXLXAPPPXSXSALXPXXLPXP 703
P + A P L PP S P LP P
Sbjct: 1249 PPAAPVILSPPAVKSLPPPAPVSLPPPPVKSLPPPAPVSLPPP 1291
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/103 (24%), Positives = 27/103 (26%)
Frame = +2
Query: 395 PPRXXCXPXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXX 574
PP P P P P +P PPP PP PP P
Sbjct: 1147 PPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPV------KSPPPPAPVILPPPPVKSP 1200
Query: 575 XXPXPXLXLXXAAXGXPXXXXXXLXAPPPXSXSALXPXXLPXP 703
P P + P L PP S P P P
Sbjct: 1201 PPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPP 1243
Score = 32.3 bits (70), Expect = 0.42
Identities = 23/96 (23%), Positives = 25/96 (26%)
Frame = +2
Query: 416 PXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXXXXPXPXL 595
P P P P +P PPP PP PP P P P +
Sbjct: 1138 PPVPVSSPPPPEKSPPPPAPVILPPPPI------KSPPPPAPVISPPPPVKSPPPPAPVI 1191
Query: 596 XLXXAAXGXPXXXXXXLXAPPPXSXSALXPXXLPXP 703
P PP S P LP P
Sbjct: 1192 LPPPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPP 1227
Score = 32.3 bits (70), Expect = 0.42
Identities = 24/103 (23%), Positives = 26/103 (25%)
Frame = +2
Query: 395 PPRXXCXPXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXX 574
PP P P P P +P PPP PP PP P
Sbjct: 1163 PPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPV------KSPPPPAPVISPPPPVKSP 1216
Query: 575 XXPXPXLXLXXAAXGXPXXXXXXLXAPPPXSXSALXPXXLPXP 703
P P + P PP S P L P
Sbjct: 1217 PPPAPVILPPPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPP 1259
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/81 (23%), Positives = 20/81 (24%)
Frame = +2
Query: 461 PXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXXXXPXPXLXLXXAAXGXPXXXXX 640
P P P P PP PP P P P + P
Sbjct: 1131 PTVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPV 1190
Query: 641 XLXAPPPXSXSALXPXXLPXP 703
L PP S P P P
Sbjct: 1191 ILPPPPVKSPPPPAPVISPPP 1211
>08_01_0059 - 394001-394708
Length = 235
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +2
Query: 395 PPRXXCXPXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXX 574
PP P P P P SP PPP PP PP P
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPP--PPTPRPYAPPPPSHPLAPPPPHISP 61
Query: 575 XXPXP 589
P P
Sbjct: 62 PAPVP 66
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/76 (23%), Positives = 19/76 (25%)
Frame = +2
Query: 446 PXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXXXXPXPXLXLXXAAXGXP 625
P P S PPP PP PP P P P P
Sbjct: 48 PPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPP 107
Query: 626 XXXXXXLXAPPPXSXS 673
PPP + S
Sbjct: 108 PPSPVKSSPPPPPAWS 123
>07_03_0177 - 14770777-14772045
Length = 422
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/103 (22%), Positives = 24/103 (23%)
Frame = -3
Query: 702 GXGRXXGXXAEXXXGGGAXSXNXXXXGXPXAAXXXXSXGXGXXXXXXGXGGPXXXXXGGX 523
G G G GGG G G G G G GG
Sbjct: 292 GIGGGFGKGGGLGGGGGLGGGGGLGGGSGLGGGIGKGGGLGGSFGKGGGLGGGFGKGGGI 351
Query: 522 XDXXXXXXXXGGGXXXGXXXGXXXXGXXGXXXXXXGXQXXRGG 394
GGG G G G G G +GG
Sbjct: 352 GGGFGKGGGLGGGGGLGGGGGGGGGGFGGGGGSGIGGGFGKGG 394
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = +2
Query: 395 PPRXXCXPXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXP 562
PP P P P P P PPP PP PP P
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,195,711
Number of Sequences: 37544
Number of extensions: 175584
Number of successful extensions: 461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -