Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_F16
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    34   0.12 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    34   0.12 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    34   0.12 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   0.66 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   0.66 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   0.66 

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/93 (26%), Positives = 26/93 (27%), Gaps = 2/93 (2%)
 Frame = +2

Query: 461 PXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXXXXPXPXLXL--XXAAXGXPXXX 634
           P  SP   PPP        S  PP     G P P      P P         A G P   
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292

Query: 635 XXXLXAPPPXSXSALXPXXLPXPGXXXXXXXAG 733
                 PPP    +     LP P        AG
Sbjct: 293 RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/93 (26%), Positives = 26/93 (27%), Gaps = 2/93 (2%)
 Frame = +2

Query: 461 PXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXXXXPXPXLXL--XXAAXGXPXXX 634
           P  SP   PPP        S  PP     G P P      P P         A G P   
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313

Query: 635 XXXLXAPPPXSXSALXPXXLPXPGXXXXXXXAG 733
                 PPP    +     LP P        AG
Sbjct: 314 RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/93 (26%), Positives = 26/93 (27%), Gaps = 2/93 (2%)
 Frame = +2

Query: 461 PXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXXXXPXPXLXL--XXAAXGXPXXX 634
           P  SP   PPP        S  PP     G P P      P P         A G P   
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298

Query: 635 XXXLXAPPPXSXSALXPXXLPXPGXXXXXXXAG 733
                 PPP    +     LP P        AG
Sbjct: 299 RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 26/102 (25%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
 Frame = +2

Query: 395  PPRXXCXPXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXX 574
            PP     P      P  P    P  +    PPP    L   S  PP      PP P    
Sbjct: 714  PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP-----PPPPPGGC 768

Query: 575  XXPXPXLXLXXAAXGXPXXXXXXLXAP-PPXSXSALXPXXLP 697
              P P         G P      + AP  P     L P  +P
Sbjct: 769  PPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 810


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 26/102 (25%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
 Frame = +2

Query: 395  PPRXXCXPXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXX 574
            PP     P      P  P    P  +    PPP    L   S  PP      PP P    
Sbjct: 714  PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP-----PPPPPGGC 768

Query: 575  XXPXPXLXLXXAAXGXPXXXXXXLXAP-PPXSXSALXPXXLP 697
              P P         G P      + AP  P     L P  +P
Sbjct: 769  PPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 810


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 26/102 (25%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
 Frame = +2

Query: 395 PPRXXCXPXXXXXXPXXPXXXXPXXSPXXXPPPXXXXLXXXSXXPPXXXXXGPPXPXXXX 574
           PP     P      P  P    P  +    PPP    L   S  PP      PP P    
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP-----PPPPPGGC 351

Query: 575 XXPXPXLXLXXAAXGXPXXXXXXLXAP-PPXSXSALXPXXLP 697
             P P         G P      + AP  P     L P  +P
Sbjct: 352 PPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVP 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,642,248
Number of Sequences: 27780
Number of extensions: 114380
Number of successful extensions: 250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)