Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_F10
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    32   0.41 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    32   0.41 
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   6.7  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 27/97 (27%), Positives = 28/97 (28%)
 Frame = +1

Query: 361 PXXPXXPPXXRPXXPYPFDXXPGDTPGCXXXXSHSXXPTPKSXXXXPXXTXXXPSXXPXP 540
           P  P  PP   P  P P    PG TP      S    P P      P  T   P     P
Sbjct: 261 PPVPPPPPSVTPMPP-PMPPTPGMTPRPPPPPSSGMWPPP--PPPPPGRTPGPPGMPGMP 317

Query: 541 XXPPXPXAPLXLPXS*TXPRXXPXXRTQXXXXPGSPP 651
             PP P +    P     P   P         P  PP
Sbjct: 318 --PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 27/97 (27%), Positives = 28/97 (28%)
 Frame = +1

Query: 361 PXXPXXPPXXRPXXPYPFDXXPGDTPGCXXXXSHSXXPTPKSXXXXPXXTXXXPSXXPXP 540
           P  P  PP   P  P P    PG TP      S    P P      P  T   P     P
Sbjct: 271 PPVPPPPPSVTPMPP-PMPPTPGMTPRPPPPPSSGMWPPP--PPPPPGRTPGPPGMPGMP 327

Query: 541 XXPPXPXAPLXLPXS*TXPRXXPXXRTQXXXXPGSPP 651
             PP P +    P     P   P         P  PP
Sbjct: 328 --PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/66 (28%), Positives = 19/66 (28%)
 Frame = +1

Query: 361 PXXPXXPPXXRPXXPYPFDXXPGDTPGCXXXXSHSXXPTPKSXXXXPXXTXXXPSXXPXP 540
           P     PP  RP    P    P D PG          P P      P      PS  P P
Sbjct: 55  PDPSSPPPAPRPSGQPPGPQGPSDLPG-----PSGAPPGPPHPSGPPHRPHPHPSRRPRP 109

Query: 541 XXPPXP 558
              P P
Sbjct: 110 TRLPRP 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,804,490
Number of Sequences: 27780
Number of extensions: 126968
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)