Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_F06
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.14
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.25
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.77
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 7.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.4
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 9.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 9.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Frame = +2
Query: 650 PAPPXXAXXPPXXAPTPAXXPXPXP---XXPXLXXXAXXAXLGRPPPRP 787
P PP A P AP P P P P P A G PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/62 (25%), Positives = 19/62 (30%)
Frame = +2
Query: 599 PXXXXPNXXXPPLXPXXPAPPXXAXXPPXXAPTPAXXPXPXPXXPXLXXXAXXAXLGRPP 778
P P P+ PAP PP P A P P P A + P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPA 796
Query: 779 PR 784
P+
Sbjct: 797 PQ 798
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +2
Query: 629 PPLXPXXP-APPXXAXXP-----PXXAPTPAXXPXPXPXXP 733
PPL P P APP A P P AP P P P P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 565 PPXPXGPPPXFXPXXXPXXXXPAPXPXAP 651
PP P P P P PAP P P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPP 258
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Frame = +2
Query: 599 PXXXXPNXXXPPLXPXXPAPPXX---AXXPPXXAPTPAXXPXPXP 724
P P+ PP+ P APP A PP PT P P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.9 bits (59), Expect = 1.8
Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 4/133 (3%)
Frame = +2
Query: 338 AXPLXATQSAXXXQXPXXTPPXPPAXAX-PAAXXPX-RPAGXMRXLP*XRDEPXNRXXRW 511
A P+ +A P TPP P + + P+A P P+ + +P P
Sbjct: 1031 APPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP----APSGAPPVP 1086
Query: 512 SXXGXXXXPRXXQAXXXXXXXXXXXXXXXPXXXXPNXXXPPLXPXXPAP--PXXAXXPPX 685
+ G P+ A P P+ P P AP P + PP
Sbjct: 1087 APSGIPPVPKPSVAAPPVPKPSVAV----PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 686 XAPTPAXXPXPXP 724
P+ A P P P
Sbjct: 1143 PKPSVAAPPVPAP 1155
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +2
Query: 599 PXXXXPNXXXPPLXPXXPAPPXXAXXPPXXAPTPAXXPXPXPXXPXLXXXAXXAXLGRPP 778
P P+ P + APP A P P+ P P P + A G PP
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP-KPSVAVPPVPAPSGAPP 1122
Query: 779 -PRP 787
P+P
Sbjct: 1123 VPKP 1126
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +2
Query: 599 PXXXXPNXXXPPLXPXXPAPPXXA--XXPPXXAPTPAXXPXPXP 724
P P+ P P APP A PP P+ A P P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = +2
Query: 599 PXXXXPNXXXPPLXPXXPAPPXX---AXXPPXXAPTPAXXPXPXP 724
P P+ PP+ APP PP AP+ P P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/75 (24%), Positives = 21/75 (28%)
Frame = +1
Query: 529 PAXAXXTSRXXRPPXPXGPPPXFXPXXXPXXXXPAPXPXAPXPSPXRPXXXTXXTHARXS 708
P +S P P G PP P P P P P P +P A
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIP----PVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 709 PXXXPXXTXXXPXXP 753
P + P P
Sbjct: 1120 APPVPKPSVAAPPVP 1134
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 344 PLXATQSAXXXQXPXXTPPXPPAXAXPAAXXPXRPAG 454
P QSA Q TPP PP P P PAG
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 650 PAPPXXAXXPPXXAPTPAXXPXPXPXXPXLXXXAXXAXLGRPPPRP 787
P P A P APTP P P P PPP P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Frame = +2
Query: 614 PNXXXPPLX--PXXPAPPXXAXXPPXXAPTPAXXP-XPXPXXP 733
P PP P P PP PP P PA P P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 629 PPLXPXXPAPPXXAXXPPXXAPTPAXXPXP 718
PP P PA P A PP A + P P
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/51 (27%), Positives = 16/51 (31%)
Frame = +2
Query: 629 PPLXPXXPAPPXXAXXPPXXAPTPAXXPXPXPXXPXLXXXAXXAXLGRPPP 781
PP P P P P P P+ P P + A PPP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 599 PXXXXPNXXXPPLXPXXPAPPXXAXXPPXXAPTPAXXPXPXPXXPXLXXXAXXAXLGRPP 778
P P L P APP + PP A P P L A A + P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 779 P 781
P
Sbjct: 185 P 185
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 670 GXXGRGXXRXXKGRGXXVXVGXX-GXXGGGGRXGXGAGXXG 551
G GRG R +G G G GGG R G G G G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRG 176
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -1
Query: 732 GXXGXGXGXXAGVGAXXGGXXAXXGGAGXXGXRGGXXXXG 613
G G G G G GG GG G G RGG G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGG-GRGGARGGRGGRG 51
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +1
Query: 574 PXGPPPXFXPXXXPXXXXPAPXPXAPXPSP 663
P GPPP + P + AP P+P
Sbjct: 59 PSGPPPSYSNSAAPATPAASASSAAPAPAP 88
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/40 (27%), Positives = 16/40 (40%)
Frame = +2
Query: 656 PPXXAXXPPXXAPTPAXXPXPXPXXPXLXXXAXXAXLGRP 775
PP + PP PTPA P P + + + + P
Sbjct: 118 PPVFSEYPPNIIPTPANETVPRIKQPSIALDSLESPVSAP 157
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/54 (25%), Positives = 18/54 (33%)
Frame = +2
Query: 287 SIREVGDEAPERRGWRAAXPLXATQSAXXXQXPXXTPPXPPAXAXPAAXXPXRP 448
S+ D + G++ T A Q P P PP PAA P
Sbjct: 329 SVAGASDYSTPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTTP 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,961
Number of Sequences: 5004
Number of extensions: 16375
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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