Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_F06
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.3  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/63 (20%), Positives = 22/63 (34%)
 Frame = +1

Query: 463 RSTIXSR*TXQPXXPVVXXRXXPAXAXXTSRXXRPPXPXGPPPXFXPXXXPXXXXPAPXP 642
           +  I ++ + QP       +  P  +    +   PP P   PP   P   P    P+   
Sbjct: 5   KQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMM 64

Query: 643 XAP 651
            +P
Sbjct: 65  ISP 67



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = +2

Query: 614 PNXXXPPLXPXXPAPPXXAXXPPXXAPTPAXXPXPXP 724
           P+    P  P   +PP  +  PP   P P   P   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,767
Number of Sequences: 438
Number of extensions: 2207
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)