Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_E17
         (1239 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.009
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.020
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   2.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   3.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   6.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   6.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 36.3 bits (80), Expect = 0.009
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 1099 PPPPPPXAXXFFXXXPPPPPPP 1034
            PPPPPP         PPPPPPP
Sbjct: 762  PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 35.9 bits (79), Expect = 0.012
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 1099 PPPPPPXAXXFFXXXPPPPPPP 1034
            PPPPPP         PPPPPPP
Sbjct: 761  PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 1099 PPPPPPXAXXFFXXXPPPPPP 1037
            P P PP A       PPPPPP
Sbjct: 748  PIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 1123 EKXKXKXXPPPPPPXAXXFFXXXPPPPPPP 1034
            +K   K  PPPPP          P P PPP
Sbjct: 725  QKLLLKSPPPPPPAVIVPTPAPAPIPVPPP 754


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.1 bits (77), Expect = 0.020
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 1099 PPPPPPXAXXFFXXXPPPPPPP 1034
            PPPPPP         PPPPPPP
Sbjct: 9    PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 32.7 bits (71), Expect = 0.11
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 1099 PPPPPPXAXXFFXXXPPPPPPPXXK 1025
            PPPPPP         PPPPPP   K
Sbjct: 10   PPPPPPPGFEPPSQPPPPPPPGYVK 34


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 6.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1054 PPPPPPP 1034
            PPPPPPP
Sbjct: 191  PPPPPPP 197



 Score = 23.8 bits (49), Expect(2) = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1054 PPPPPPP 1034
            PPPPPPP
Sbjct: 238  PPPPPPP 244



 Score = 22.2 bits (45), Expect(2) = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 1099 PPPPPPXA 1076
            PPPPPP A
Sbjct: 191  PPPPPPPA 198



 Score = 21.0 bits (42), Expect(2) = 6.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 1099 PPPPPP 1082
            PPPPPP
Sbjct: 190  PPPPPP 195


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 3.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1054 PPPPPPP 1034
            PPPPPPP
Sbjct: 1095 PPPPPPP 1101



 Score = 21.8 bits (44), Expect(2) = 3.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 1114 KXKXXPPPPPP 1082
            K    PPPPPP
Sbjct: 1090 KPSAVPPPPPP 1100


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 6.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1054 PPPPPPP 1034
            PPPPPPP
Sbjct: 946  PPPPPPP 952



 Score = 23.8 bits (49), Expect(2) = 6.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1054 PPPPPPP 1034
            PPPPPPP
Sbjct: 947  PPPPPPP 953



 Score = 21.0 bits (42), Expect(2) = 6.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 1099 PPPPPP 1082
            PPPPPP
Sbjct: 907  PPPPPP 912



 Score = 21.0 bits (42), Expect(2) = 6.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 1099 PPPPPP 1082
            PPPPPP
Sbjct: 945  PPPPPP 950


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect(2) = 6.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1054 PPPPPPP 1034
            PPPPPPP
Sbjct: 371  PPPPPPP 377



 Score = 21.0 bits (42), Expect(2) = 6.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 1099 PPPPPP 1082
            PPPPPP
Sbjct: 370  PPPPPP 375


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 1093 PPPPXAXXFFXXXPPPPPPP 1034
            PPPP A       P  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
 Frame = -3

Query: 1099 PPPPPPXAXXFFXXXP--------PPPPPP 1034
            PPPPPP         P        PPPPPP
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,735
Number of Sequences: 5004
Number of extensions: 10134
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)