Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_E14
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 161 7e-40
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 158 5e-39
09_04_0225 - 15855544-15855727,15855796-15856406 30 1.6
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 2.8
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 2.8
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907... 29 3.7
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 29 4.9
06_03_0543 + 21967787-21970261 29 4.9
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 6.5
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 8.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 161 bits (390), Expect = 7e-40
Identities = 75/136 (55%), Positives = 97/136 (71%)
Frame = -3
Query: 722 AVXKFXXAHRWYAYCGNVFTPGVFTNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPV 543
AV KF +A G TPG FTNQ+Q +F E RLLI+ DP DHQPI E++ NIP
Sbjct: 90 AVLKFAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 542 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 363
IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFY
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208
Query: 362 RDPEESEKDEQQAKEQ 315
RDPEE+++ E++A Q
Sbjct: 209 RDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 158 bits (383), Expect = 5e-39
Identities = 73/132 (55%), Positives = 94/132 (71%)
Frame = -3
Query: 722 AVXKFXXAHRWYAYCGNVFTPGVFTNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPV 543
AV KF +A G TPG FTNQ+Q +F E RLLI+ DP DHQPI E++ NIP
Sbjct: 90 AVLKFAQYTGAHAIAGR-HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 542 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 363
IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFY
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208
Query: 362 RDPEESEKDEQQ 327
RDPEE+++ E++
Sbjct: 209 RDPEEAKEQEEE 220
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 228 GYRPACCTRCSSC-FWSTPC--SRRMVCPGTR 142
G P+ TRC SC W+T C + R CP TR
Sbjct: 171 GATPSATTRCRSCTAWATSCPGTSRAGCPPTR 202
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 206 VQQAGRYPQPMKPLAPVFHSSLHGQ 280
V+++ RYP P +PLAP+ S HG+
Sbjct: 223 VEKSVRYPLPPRPLAPICVFSHHGR 247
>05_07_0340 +
29389314-29389627,29389966-29390112,29390654-29390789,
29391098-29391199,29391801-29391920,29392033-29392113,
29392578-29392918,29393069-29393314,29394195-29394519,
29395123-29395356,29395437-29395691
Length = 766
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 692 WYAYCGNVFTPGVFTNQIQAAFREXRLLIVLDPAQDHQPITEASYVN 552
+Y YC N F P N +Q A R+ L +P D + +Y++
Sbjct: 664 FYKYCKNRFEPAFVRNPLQEAMRKDTLERAREPTFDLKAYLANAYLH 710
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 164 LLEQGVLQKQELQRVQQAGRYPQPMKPLAP 253
LLE+ + KQ+ Q+ QQAG P +P+AP
Sbjct: 178 LLEKLKIAKQQQQQQQQAGPEPPRGEPIAP 207
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 357 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 473
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,677,548
Number of Sequences: 37544
Number of extensions: 345943
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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